HIBIT 2019

17-18 OCTOBER 2019

RSG-Turkey Student Symposium

19 OCTOBER 2019

IZMIR BIOMEDICINE AND GENOME CENTER
Abstract Book

ABOUT

The International Symposium on Health Informatics and Bioinformatics, (HIBIT), now in its twelfth year HIBIT 2019, aims to bring together academics, researchers and practitioners who work in these popular and fulfilling areas and to create the much-needed synergy among medical, biological and information technology sectors. HIBIT is one of the few conferences emphasizing such synergy. HIBIT provides a forum for discussion, exploration and development of both theoretical and practical aspects of health informatics and bioinformatics and a chance to follow current research in this area by networking with other bioinformatician.


HIBIT Abstract Book

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Conference co-chairs

- Ezgi KARACA, Izmir Biomedicine and Genome Center
- Gökhan KARAKÜLAH, Izmir Biomedicine and Genome Center
- Serap ERKEK, Izmir Biomedicine and Genome Center
- Yavuz OKTAY, Izmir Biomedicine and Genome Center

Organization committee

- Ezgi KARACA, Izmir Biomedicine and Genome Center
- Gökhan KARAKÜLAH, Izmir Biomedicine and Genome Center
- Işık Barış FİDANER, Izmir Biomedicine and Genome Center
- Serap ERKEK, Izmir Biomedicine and Genome Center
- Yavuz OKTAY, Izmir Biomedicine and Genome Center

Scientific Committe

- Abdullah KAHRAMAN, University Hospital Zurich
- Alper KÜÇÜKURAL, University of Massachusetts Medical School
- Aslı SUNER, Ege University
- Athanasia PAVLOPOULOU, Izmir Biomedicine and Genome Center
- Attila GÜRSOY, Koc University
- Aybar Can ACAR, Middle East Technical University
- Bahar DELİBAŞ, Kadir Has University
- Barış FİDANER, Izmir Biomedicine and Genome Center
- Barış SÜZEK, Mugla Sıtkı Koçman Universty
- Bilge KARACALI, Izmir Institute of Technology
- Burcu BAKIR-GÜNGÖR, Abdullah Gul University
- Emre GÜNEY, Pompeu Fabra University
- Ercüment ÇİÇEK, Bilkent University
- Evren KOBAN, Ege University
- Jens ALLMER, Wageningen University
- Joao RODRIGUES, Stanford University
- Levent CAVAS, Dokuz Eylül University
- Malik YOUSEF, Zafat Academic College




- Maria-Jesus MARTIN, European Bioinformatics Institute
- Nurcan TUNÇBAĞ, Middle East Techical University
- Ogün ADEBALI, Sabanci University
- Oğuz DİCLE, Dokuz Eylül University
- Özlen KONU, Bilkent University
- Öznur TAŞTAN, Sabancı University
- Panagiotis KASTRITIS , MLU Halle
- Rengül ÇETIN ATALAY, Middle East Techical University
- Tolga CAN, Middle East Techical University
- Tuğba ÖZAL İLDENİZ, Acibadem University
- Tuğba SÜZEK, Mugla Sıtkı Koçman University
- Tunca DOĞAN, Hacettepe University, Institute of Informatics
- Türkan HALİLOĞLU, Bogazici University
- Uğur SEZERMAN, Acibadem University
- Volkan ATALAY, Middle East Techical University
- Yeşim AYDIN SON, Middle East Techical University
- Zerrin IŞIK, Dokuz Eylül University

Keynote Speakers

Hasan DEMİRCİ

Koc University & Stanford PULSE Institute

Matthias SAMWALD

Medical University of Vienna

Mehmet SOMEL

Middle East Techical University

Rita CASADIO

University of Bologna

Türkan HALİLOĞLU

Bogazici University

Invited Speakers

Alper SELVER

Dokuz Eylul University

Burcu BAKIR-GÜNGÖR

Abdullah Gul University

Nurcan TUNÇBAĞ

Middle East Techical University

Oğuz DİCLE

Dokuz Eylul University

Özlen KONU

Bilkent University

Serdar DURDAĞI

BAU

Serhat TOZBURUN

Izmir Biomedicine and Genome Center

Tunahan ÇAKIR

GTU

Zerrin IŞIK

Dokuz Eylul University

Program

09:00-09:15

Welcome & Opening Speech
Mehmet ÖZTÜRK

09:15-10:00

Keynote Lecture I
Rita CASADIO
Functional and Structural Features of Disease-Related Protein Variants

10:00-10:45

Keynote Lecture II
Hasan DEMİRCİ
Structure-Based Antibiotic Development Driven by Ambient-Temperature Serial Femtosecond X-ray Crystallography

10:45-11:15

Coffee Break

Omics Technologies

11:15-11:40

Nurcan TUNÇBAĞ
Personalized Medicine Guided by Integrative Network Modeling

11:40-12:05

Tunahan ÇAKIR
Network-based Analysis of Transcriptome Data to Unravel Molecular Mechanisms Behind Cellular Impairments

12:05-12:30

Zerrin IŞIK
Network Based Approaches for Compound Target Identification

12:30-12:45

Selected talk
Ercüment ÇİÇEK
SPADIS: An Algorithm for Selecting Predictive and Diverse SNPs in GWAS

12:45-13:45

Lunch

13:45-14:00

Poster Mounting

14:00-14:25

Özlen KONU
Comparative Transcriptomics of Zebrafish and Mammals

14:25-14:50

Burcu BAKIR-GÜNGÖR
Network Oriented Multi-omics Data Analysis Methodologies to Enlighten the Molecular Mechanisms of Human Complex Diseases

14:50-15:05

Selected talk
Ogün ADEBALİ
Comparison of Nucleotide Excision Repair Profiles between Gray Mouse Lemur and Human

15:05-15:20

Selected talk
Yasin KAYMAZ
A hierarchical random forest approach for cell type projections across single cell RNAseq datasets

15:20-15:35

Selected talk
İlayda Betül UÇAR
Assessing the Impact of Proteome Redundancy Minimization in UniProtKB

15:35-15:50

Selected talk
Arda SÖYLEV
Discovery of Structural Variations in Ancient Genomes

15:50–16:20

Coffee Break

16:20-16:30

Sponsor talk
Qiagen
Ferda Altaytaş
Qiagen Customer Solutions Manager, Clinical Genomics NGS & Bioinformatics

16:30-16:45

Selected talk
Betül BAZ
Genome-scale Metabolic Network Reconstruction of Klebsiella pneumoniae HS11286

16:45-17:00

Selected talk
Tuğçe BOZKURT & Umut GERLEVİK
Identification of a Novel Missense Variant in the PRKAR1A Gene and Its Pathogenicity Mechanism

17:00-17:45

Keynote Lecture III
Mehmet SOMEL
Ancient Genomics in Anatolia: Challenges and Opportunities

17:45-19:10

Poster session
See list of posters in Session - I

19:15-22:00

Conference Dinner at Bogazici Restraurant

09:00–09:45

Keynote Lecture IV
Matthias SAMWALD
Transformative Artificial Intelligence in Life Science and Health Care: Mapping the Challenges

Computational Structural Biology and Drug Design

09:45-10:10

Serdar DURDAĞI
Integration of Machine Learning, Text Mining, Binary QSAR Models and Target-Driven Virtual Screening Approaches for the Identification of Novel Small Molecule Therapeutics

10:10-10:25

Selected talk
Nuray SÖĞÜNMEZ
Allosteric Communications in Inactive States of Human β2-Adrenergic Receptor (β2-AR)

10:25-10:40

Selected talk
Seyit KALE
The role of computational modeling in understanding nucleosome dynamics

10:40-10:55

Selected talk
Deniz DOĞAN
Structural Investigation of De Novo DNA Methylation

10:55-11:30

Coffee Break

11:30-12:15

Keynote Lecture V
Türkan HALİLOĞLU
Dynamic Order in Allosteric Interactions of Proteins

12:15-12:30

Selected talk
Özge KÜRKÇÜOĞLU
Exploring Allosteric Communication on the Ribosomal Tunnel in Human and Bacteria

12:30-12:45

Selected talk
Özge DUMAN
Intrinsic Allosteric Dynamics in G-protein Coupled Receptors

12:45-13:00

Selected talk
Ahmet RİFAİOĞLU
Receptor-Ligand Binding Affinity Prediction via Multi-Channel Deep Chemogenomic Modeling

13:00-13:15

Selected talk
Mert GÖLCÜK
Molecular Dynamics Simulations of the Dynein Linker Movement

13:15-13:30

Selected talk
Merve ARSLAN
Effects of Vernier Zone Residues on Antibody Multi-Specificity

13:30-14:30

Lunch

14:30-14:45

Poster Mounting

14:45-16:15

Poster session
See list of posters in Session - II

Bioengineering and Health Informatics

16:15-16:40

Oğuz DİCLE
Medical Informatics in the Era of Artificial Intelligence

16:40-17:05

Alper SELVER
Combining Clinical and Molecular Data Using Machine Learning

17:05-17:30

Serhat TOZBURUN
Decision Support Systems Based on Artificial Intelligence in Colonoscopy

17:30-17:45

Selected talk
Heval ATAŞ
CROssBAR: Comprehensive Resource of Biomedical Relations with Network Representations and Deep Learning

17:45-18:00

Selected talk
Rafsan AHMED
MEXCOWalk: Mutual Exclusion and Coverage Based Random Walk to Identify Cancer Modules

18:00-18:15

Closing Ceremony & Travel Awards

09:00 – 09:30

Opening Session
Melike Dönertaş, EMBL-EBI

09:30 – 10:10

Keynote I
Tunca DOĞAN, Hacettepe University
Important Factors and Pitfalls of Predictive Modelling in Bioinformatics

10:10 – 10:25

Student Presentation I
Berk Turhan,Sabancı University
Preferential Nucleotide Excision Repair in Exons

10:25 – 10:40

Student Presentation II
Dilek Koptekin, Middle East Technical University
Investigating genetic continuity of human populations in Anatolia over the past 15,000 years

10:40 - 11:05

Coffee Break

11:05 – 11:45

Keynote II
Serap ERKEK, Izmir Biomedicine and Genome Center
Epigenetic regulation in cancer

11:45 - 12:00

Student Presentation III
Habibe Cansu Demirel, Middle East Technical University
Modeling the Tumor Specific Network Rewiring by Integrating Alternative Splicing Events with Structural Interactome 

12:00 - 12:15

HIBIT Poster Awards

12:15 - 12:30

Sponsor talk
Triogen

12:30 - 12:45

Sponsor talk
Medsantek

12:45 - 13:30

Lunch

13:30 - 15:30

Career Session
Mehmet Somel, Middle East Technical University
Efe Sezgin, Izmir Institute of Technology
Tolga Can, Middle East Technical University
Nurcan Tunçbağ, Middle East Technical University
Yavuz Oktay, Izmir Biomedicine and Genome Center
Ercüment Çiçek, Bilkent University
Öznur Taştan, Sabancı University
Serdar Durdağı, Bahcesehir University

15:30 - 16:00

Coffee Break

16:00 - 17:30

Short Course
Melike Dönertaş, EMBL-EBI
Introduction to Scientific Figure Design & Hands-on Course Using R

-To find detailed information about the student symposium and program: http://symposium.rsgturkey.com








Accommodation

Ramada Encore

Ramada Encore

Single room 220 TL
Double room 280 TL
Triple room 340 TL

We kindly ask you to use the code "HIBIT 2019" while making the reservation.









REGISTRATION

Registrations are closed as the capacity is full. Thank you for your interest in HIBIT 2019.

Registration fee includes:

  • Cost of Attendance for one Participant
  • Participation Certificate
  • Conference Bag & Content
  • Free Wireless Internet Connection
  • Lunch and Coffee Breaks
  • Conference Dinner








Sponsors





EMBO Logo

Gold Sponsors

Silver Sponsors

MedSantek Logo

In-Kind Sponsors

Merck Logo
Sahinler Kimya


TÜBİTAK 2223-B Organizing National Scientific Meetings Grant Programme









CONTACT

Address

Izmir Biomedicine and Genome Center Dokuz Eylul University Health Campus, 35330, Balcova/IZMIR

Send us a Message

Transport

Taxi
Taxi, in general is quite reasonable. So, if you, as a visitor not having budget limitations, it is an advisable means of transportation. You should of course remember to check that the "taximeter" showing how much you should pay is turned on. The Adnan Menderes Airport is located 20km away from the conference venue (İBG). One of the simplest ways to reach the conference venue is to take a taxi and go to the Dokuz Eylul health campus. The average duration of travel is around 20 minutes and cost is approximately 85-90 Turkish liras (15 EUR).
Bus
Within the city of Izmir, the main public transport means is the red municipal buses. In these buses you can use money or you can use "İzmirim Kart" (City Card). One of the cheapest ways to reach İBG is to take the 202 bus route that departs from the arrival level of the airport (the ground floor, bus station). At the "Fahrettin Altay Meydan" station, drop off from Route 202, across the street at "Uckuyular Pazaryeri" station get on one of the bus lines (5, 6, 7, 551). The nearest bus stop to the İBG is “Dokuz Eylul”. Average duration: 40mins. For detailed information about route and departure times please click here.
Metro
In the 11.6 km-long line of the İzmir metro there are a total of 10 stations, namely the Hatay/ Fahrettin Altay, Konak, Çankaya, Basmane, Hilal, Stadyum, Halkapınar, Sanayi, Bornova/ Bölge and the Bornova ones. In the Bornova/Halkapınar, Hatay/Üçyol connection stations there is a connection with a bus while in the Konak Station there is both a bus and a ferry connection.
Other
For airport transportation please click here.
For Metro transportation please click here.
For İzban transportation please click here.
For İzdeniz transportation please click here.
Tickets & Passes
İzmir has two travel cards, which cover bus, metro, İzban and ferry trips. These are available and can be recharged at stations, piers and shops with the Kent Kart sign. İzmirim Kart (City Card) You pay a 7 TL (1.2 EUR) deposit when you buy the card and then top it up with credit. When you use the card, 2.40 (0.4 EUR) is debited from it, then every journey you make for the next 90 minutes is free.