Genc Lab. on Neurodegeneration and Neuroprotection

OVERVIEW

Neurodegenerative diseases are incurable and debilitating conditions that result in progressive degeneration of nerve cells. The primary research focus of our group is the molecular mechanism of neurodegeneration and neuroprotection. Through identification of the molecular mechanisms underlying neurodegeneration, we are trying to develop new strategies towards neuroprotection. On the other hand, we are trying to develop novel therapeutic agents for the treatment of neurodegenerative disorders. Our other aim is to identify potential diagnostic/prognostic biomarkers, especially for Alzheimer’s disease. We also focus on the role of miRNAs in the biological and pathological process of the central nervous system.

RESEARCH INTERESTS

Our group investigate the molecular mechanisms that underlie cell death in neurodegeneration and neuroinflammation and assess novel strategies for neuroprotection. Erythropoietin, Lithium and anti-oxidant molecules (Sulforaphane, Resveratrol, Melatonin) will be used future research. We will also search anti-inflammatory effects of these molecules. In a currently funded project, we are looking the resveratrol effect on inflammasome activation in microglial cells. Inflammasome activation is one of the immune responses in innate immunity and it differs from classical immune responses. Both membrane-bound and cytosolic receptors contribute to this process. Besides microbes or microbial molecules, it has been known that metabolic stress products (uric acid crystals, ATP, etc.) and exogenous agents such as asbestos, silica can also trigger inflammasome activation. Inflammasome activation leads to activation of caspase-1, interleukin -1β (IL-1β) and interleukin -18 (IL-18) cytokine release from cells and inflammasome activation may also lead to pyroptotic cell death in the cell. For this reason, inflammasome activation should be prevented under such conditions. Alzheimer’s disease (AD) represents the most common form of dementia. According to World Health Organization (WHO)’s report in 2012, more than 35 million individuals are affected by AD. Currently, there is no cure or any method that would prevent disease progression. The definitive diagnosis of AD can be made only in the postmortem period by examining the brain tissue during a biopsy. Screening of AD patients remains an expensive approach, and it is crucial that ongoing research in this field is focused on developing inexpensive and reliable methods towards early diagnosis of AD. We especially are searching miRNAs expression profile as a biomarker. MicroRNAs (miRNAs) are small, non-coding RNA molecules, which regulate various metabolic activities. Circulating miRNAs are promising candidates for blood-based biomarkers, given their high stability in circulation, tissue- and/or cell-specific expression and ease of miRNA analysis with existing methods (e.g. real-time PCR). Circulating serum miRNAs would be a good choice as biomarkers for neurological and psychiatric disorders. We are preparing a research proposal for miRNA expression profile as a biomarker in Alzheimer’s disease.

RESEARCH HIGHLIGHTS

Alzheimer’s Disease (AD) and Parkinson’s disease are the most common neurodegenerative diseases. Definitive diagnosis can only be established by pathological evaluation in post-mortem period. Therefore, there is a biomarker need for both definitive diagnosis and development of clinical observation. In recent studies, we developed standard operating procedures (SOPs) for pre-analytical and analytical procedures. We analyzed the performance of one recently released human-specific enzyme-linked immunosorbent assay (ELISA) for the quantification of alpha-synuclein in CSF. miRNAs have a major role in the biological and pathological process of the central nervous system. Apart from biomarker studies, we showed novel effects of two neuroprotective molecules. MicroRNA-451 and 888-5p mediate neuroprotective effects of Erythropoietin and neuroprotective effects of Lithium depends on miR-34a inhibition. In next future, miRNAs expression alternation could be a new therapeutic strategy for neurodegenerative disorders.

Group Members

Genc Lab. on Neurodegeneration and Neuroprotection

Research Group Leader

Şermin GENÇ
sermin.genc@ibg.edu.tr
+90 232 299 41 00 (5121)

Abdullah KUMRAL Research Group Member  abdullah.kumral@ibg.edu.tr


Nilsu AŞKIN Research Technician  nilsu.askin@ibg.edu.tr


Çağla KİSER PhD Student  cagla.kiser@ibg.edu.tr


Bilge KARAÇİÇEK Post-Doc Researcher  bilge.karacicek@ibg.edu.tr


Çağla NİĞDE MSc Student  cagla.nigde@ibg.edu.tr


Mehmet ERDEM Visiting Student  None


Burak İbrahim ARIÖZ PhD Student  burak.arioz@ibg.edu.tr


Ceren Perihan GÖNÜL PhD Student  cerenperihan.gonul@ibg.edu.tr


Emre TARAKÇIOĞLU PhD Student  emre.tarakcioglu@ibg.edu.tr


Başak KESKİNOĞLU Undergraduate Student  basak.keskinoglu@ibg.edu.tr


Fatma Sıla SOY Visiting Researcher  fatmasila.soy@ibg.edu.tr


İlkcan ERCAN ORHAN PhD Student  ilkcan.ercan@ibg.edu.tr


Bedir İrem ELTUTAN PhD Student  irem.eltutan@ibg.edu.tr


Hüseyin KOCAKUŞAK Undergraduate Student  huseyin.kocakusak@ibg.edu.tr


Cansu YAKA PhD Student  cansu.yaka@ibg.edu.tr


Bora TAŞTAN PhD Student  bora.tastan@ibg.edu.tr


Kemal Uğur TÜFEKÇİ Visiting Researcher  ugur.tufekci@ibg.edu.tr


Görsev YENER Visiting Researcher  gorsev.yener@ibg.edu.tr


Defne ENGÜR PhD Student  defne.engur@ibg.edu.tr


Serap CİLAKER MIÇILI Visiting Researcher  serap.cilaker@ibg.edu.tr


TOLGA BESCİ PhD Student  tolga.besci@ibg.edu.tr


Former Members

Ayşen ÇOTUK Undergraduate Student  aysen.cotuk@msfr.ibg.edu.tr


Hülya ÇAMLIBEL Researcher 


Burcu IRMAK Visiting Student  burcu.irmak@msfr.ibg.edu.tr


Kemal Uğur TÜFEKÇİ Post-Doc Researcher  ugur.tufekci@ibg.edu.tr


Melis OLÇUM Post-Doc Researcher  melis.olcum@ibg.edu.tr


Nurullah SATI MSc Student  nurullah.sati@msfr.ibg.edu.tr


Devrim Yağmur DURUR MSc Student  devrim.durur@msfr.ibg.edu.tr


Selected Publications

Bora Tastan, Burak I. Arioz, Sermin Genc. Targeting NLRP3 Inflammasome With Nrf2 Inducers in Central Nervous System Disorders. Frontiers in Immunology. 2022 March . doi:10.3389/fimmu.2022.865772. Download

Durur DY, Tastan B, Ugur Tufekci K, Olcum M, Uzuner H, Karakülah G, Yener G, Genc S. Alteration of miRNAs in Small Neuron-Derived Extracellular Vesicles of Alzheimer's Disease Patients and the Effect of Extracellular Vesicles on Microglial Immune Responses.. Journal of Molecular Neuroscience : MN. 2022 April ; 72 : 1182-1194. doi:10.1007/s12031-022-02012-y. Download

Tarakcioglu E, Tastan B, Arioz BI, Tufekci KU, Genc S. Melatonin Alters the miRNA Transcriptome of Inflammasome Activation in Murine Microglial Cells.. Neurochemical Research. 2022 July . doi:10.1007/s11064-022-03674-1. Download

Tufekci KU, Ercan I, Isci KB, Olcum M, Tastan B, Gonul CP, Genc K, Genc S. Sulforaphane inhibits NLRP3 inflammasome activation in microglia through Nrf2-mediated miRNA alteration.. Immunology letters. 2021 May . doi:10.1016/j.imlet.2021.03.004. Download

Kemal Uğur TÜFEKCİ, Halil ATEŞ, Şermin GENÇ. Endothelial Protein C Receptor Expression is Regulated by Sp1 Transcription Factor in Murine Microglia. Journal of Basic and Clinical Health Sciences. 2021 February ; 5 (1) : 6-13. doi:10.30621/jbachs.854244. Download

M Olcum, KU Tufekci, DY Durur, B Tastan, IN Gokbayrak, K Genc, S Genc. Ethyl Pyruvate Attenuates Microglial NLRP3 Inflammasome Activation via Inhibition of HMGB1/NF-κB/miR-223 Signaling. Antioxidants. 2021 May ; 10 (5) : 745. doi:10.3390/antiox10050745. Download

Arioz BI, Tufekci KU, Olcum M, Durur DY, Akarlar BA, Ozlu N, Bagriyanik HA, Keskinoglu P, Yener G, Genc S. Proteome profiling of neuron-derived exosomes in Alzheimer's disease reveals hemoglobin as a potential biomarker.. Neuroscience letters. 2021 June ; 755 : 135914. doi:10.1016/j.neulet.2021.135914. Download

Kemal Ugur Tufekci, Begum Alural, Emre Tarakcioglu, Tugba San, Sermin Genc. Lithium inhibits oxidative stress-induced neuronal senescence through miR-34a. Molecular Biology Reports. 2021 May . doi:10.1007/s11033-021-06430-w. Download

Burak Ibrahim Arioz, Emre Tarakcioglu, Melis Olcum , Sermin Genc. The Role of Melatonin on NLRP3 Inflammasome Activation in Diseases. Antioxidants. 2021 June ; 10 (7) : 1020. doi:10.3390/antiox10071020. Download

Kemal Ugur Tufekci, Jens Allmer, Kürşat Bora Çarman, Erhan Bayram, Yasemin Topçu, Semra Hız, Şermin Genç, Uluç Yiş. Antiviral microRNA expression signatures are altered in subacute sclerosing panencephalitis. Neurological Sciences and Neurophysiology. 2021 August ; 38 (3) : 166-172. doi:10.4103/nsn.nsn_57_21. Download

Kiser C, Gonul CP, Olcum M, Genc S. Inhibitory effects of sulforaphane on NLRP3 inflammasome activation.. Molecular immunology. 2021 October ; 140 : 175-185. doi:10.1016/j.molimm.2021.10.014. Download

Kemal Ugur Tufekci, Bedir Irem Eltutan, Kamer Burak Isci, Sermin Genc. Resveratrol Inhibits NLRP3 Inflammasome-Induced Pyroptosis and miR-155 Expression in Microglia Through Sirt1/AMPK Pathway. Neurotoxicity Research. 2021 November . doi:10.1007/s12640-021-00435-w. Download

Bora Tastan, Burak I. Arioz, Kemal Ugur Tufekci, Emre Tarakcioglu, Ceren Perihan Gonul, Kursad Genc, Sermin Genc. Dimethyl Fumarate Alleviates NLRP3 Inflammasome Activation in Microglia and Sickness Behavior in LPS-Challenged Mice. Frontiers in Immunology. 2021 November ; 12 : 4736. doi:10.3389/fimmu.2021.737065. Download

Ceylan D, Tufekci KU, Keskinoglu P, Genc S, Özerdem A. Circulating exosomal microRNAs in bipolar disorder.. Journal of affective disorders. 2020 February ; 262 : 99-107. doi:10.1016/j.jad.2019.10.038. Download

Olcum M, Tastan B, Kiser C, Genc S, Genc K. Microglial NLRP3 inflammasome activation in multiple sclerosis.. Advances in protein chemistry and structural biology. 2020 January ; 119 : 247-308. doi:10.1016/bs.apcsb.2019.08.007. Download

Olcum M, Tastan B, Ercan I, Eltutan IB, Genc S. Inhibitory effects of phytochemicals on NLRP3 inflammasome activation: A review.. Phytomedicine : international journal of phytotherapy and phytopharmacology. 2020 August ; 75 : 153238. doi:10.1016/j.phymed.2020.153238. Download

Micili SC, Engür D, Genc S, Ercan I, Soy S, Baysal B, Kumral A. Oxygen exposure in early life activates NLRP3 inflammasome in mouse brain.. Neuroscience letters. 2020 November ; 738 : 135389. doi:10.1016/j.neulet.2020.135389. Download

Onur Bulut, Anıl Tanburoğlu, Gülşah Bölük, Nurhak Demir, Erden Eren, Ufuk Vurgun, Şermin Genç, Görsev Yener. Examination of IL-1β level as an inflammasome marker in Alzheimer's disease. Neurological Sciences and Neurophysiology. 2019 September ; 36 (3) : 141-147. doi:10.5152/NSN.2019.10324. Download

Arioz BI, Tastan B, Tarakcioglu E, Tufekci KU, Olcum M, Ersoy N, Bagriyanik A, Genc K, Genc S. Melatonin Attenuates LPS-Induced Acute Depressive-Like Behaviors and Microglial NLRP3 Inflammasome Activation Through the SIRT1/Nrf2 Pathway.. Frontiers in immunology. 2019 July ; 10 : 1511. doi:10.3389/fimmu.2019.01511. Download

Tufekci KU, Vurgun U, Yigitaslan O, Keskinoglu P, Yaka E, Kutluk K, Genc S. Follow-up Analysis of Serum TNF-Related Apoptosis-Inducing Ligand Protein and mRNA Expression in Peripheral Blood Mononuclear Cells from Patients with Ischemic Stroke. Front Neurol. 2018 March ; 9 : 102. doi:10.3389/fneur.2018.00102. Download

Ercan I, Tufekci KU, Karaca E, Genc S, Genc K. Peptide Derivatives of Erythropoietin in the Treatment of Neuroinflammation and Neurodegeneration. Advances in Protein Chemistry and Structural Biology. 2018 February ; 112 : 309-357. doi:10.1016/bs.apcsb.2018.01.007. Download

Genc B, Bozan HR, Genc S, Genc K.. Stem Cell Therapy for Multiple Sclerosis. Adv Exp Med Biol. 2018 July : 145-175. doi:10.1007/5584_2018_247. Download

Eren E, Tufekci KU, Isci KB, Tastan B, Genc K, Genc S.. Sulforaphane Inhibits Lipopolysaccharide-Induced Inflammation, Cytotoxicity, Oxidative Stress, and miR-155 Expression and Switches to Mox Phenotype through Activating Extracellular Signal-Regulated Kinase 1/2-Nuclear Factor Erythroid 2-Related Factor 2/Antioxidant Response Element Pathway in Murine Microglial Cells. Front Immunol. 2018 January ; 9 : 36. doi:10.3389/fimmu.2018.00036. Download

Alural B, Ayyildiz ZO, Tufekci KU, Genc S, Genc K. Erythropoietin Promotes Glioblastoma via miR-451 Suppression. Vitam Horm. 2017 ; 105 : 249-271. doi:10.1016/bs.vh.2017.03.002. Download

van Waalwijk van Doorn LJ, Gispert JD, Kuiperij HB, Claassen JA, Arighi A, Baldeiras I, Blennow K, Bozzali M, Castelo-Branco M, Cavedo E, Emek-Savaş .... Improved Cerebrospinal Fluid-Based Discrimination between Alzheimer’s Disease Patients and Controls after Correction for Ventricular Volumes. J Alzheimers Dis. 2017 January ; 56 (2) : 543-555. doi:10.3233/JAD-160668. Download

Alural B, Genc S, Haggarty S.. Diagnostic and therapeutic potential of microRNAs in neuropsychiatric disorders: Past, present, and future. Progress in Neuro-Psychopharmacology and Biological Psychiatry. 2017 February ; 73 : 87-103. doi:10.1016/j.pnpbp.2016.03.010. Download

Gümürdü A., Yildiz R., Eren E., Karakülah G., Ünver T., Genç Ş. & Park Y.. MicroRNA exocytosis by large dense-core vesicle fusion. Scientific Reports. 2017 March ; 7 : 45661. doi:10.1038/srep45661. Download

Alural, Begum; Ozerdem, Aysegul; Allmer, Jens; Genc, Kursad; Genc, Sermin. Lithium protects against paraquat neurotoxicity by NRF2 activation and miR-34a inhibition in SH-SY5Y cells. FRONTIERS IN CELLULAR NEUROSCIENCE. 2015 May ; 9 . doi:10.3389/fncel.2015.00209. Download

Alural B, Duran GA, Tufekci KU, Allmer J, Onkal Z, Tunali D, Genc K, Genc S. EPO Mediates Neurotrophic, Neuroprotective, Anti-Oxidant, and Anti-Apoptotic Effects via Downregulation of miR-451 and miR-885-5p in SH-SY5Y Neuron-Like Cells. Frontiers in Immunology. 2014 September ; 5 : 475. doi:10.3389/fimmu.2014.00475. Download

Total : 29

Selected Book Chapters

Role of exosomal microRNAs in cell-to-cell communication (2022). miRNomics:MicroRNA Biology and Computational Analysis. Springer.

MicroRNAs in Genetic Etiology of Human Diseases (2022). miRNomics:MicroRNA Biology and Computational Analysis. Springer.

Santral Sinir Sistemi Hastalıklarında Kök Hücre Uygulamaları (2021). Kök Hücre ve Rejeneratif Tıp. Türkiye Klinikleri.

Peptide Derivatives of Erythropoietin in the Treatment of Neuroinflammation and Neurodegeneration (2018). Advances in Protein Chemistry and Structural Biology. Academic Press.

Stem Cell-Based Approaches for Treatment of Glioblastoma (2017). Neurological Regeneration. Springer.

Induced Pluripotent Stem Cell Therapy and Safety Concerns in Age-Related Chronic Neurodegenerative Diseases (2017). Safety, Ethics and Regulations. Springer.

The Role of MicroRNAs in Biological Processes (2014). miRNomics: MicroRNA Biology and Computational Analysis. Humana Press.

The role of microRNAs in human diseases (2014). miRNomics: MicroRNA Biology and Computational Analysis. Humana Press.

Total : 8

Selected Proceedings

Bora Taştan, Burak İbrahim Arıöz, Nilsu Aşkın, Ayşen Çotuk, Şermin Genç 2021, 'Regulatory role of lncRNA NEAT1 in microglial NLRP3 inflammasome activation', The inflammasomes: The next Frontier, Münih, Almanya, Sept. 21, 2021 .

Burak İbrahim Arıöz, Kemal Uğur Tüfekci, Devrim Yağmur Durur, Melis Olçum, Nurhan Özlü, Görsev Yener, Şermin Genç 2020, 'Alzheimer Hastalarının Nöron Kökenli Ekzozomlarının Proteomik Analizi', 3. Ulusal Proteomik Kongresi, İstanbul, Feb. 27, 2020 .

Kemal Uğur Tüfekci, Devrim Yağmur Durur, İrem Nur Gökbayrak, Şermin Genç 2020, 'ETİL PİRÜVAT MİKROGLİAL HÜCRELERDE NF-KB VE HMGB1 İNHİBİSYONU ARACILIĞIYLA NLRP3 İNFLAMAZOMUNU BASKILAMAKTADIR', İzmir Demokrasi Üniversitesi Uluslararası Sağlık Bilimleri Kongresi 2020, İzmir, June 20, 2020 .

B. Tastan, B.I. Arioz, K.U. Tufekci, S. Genc 2019, 'Dimethyl Fumarate ameliorates NLRP3 inflammasome activation in murine microglia', The XIV European Meeting on Glial Cells in Health and Disease, Porto, Portugal, July 10, 2019 .

K.U. Tufekci, I. Ercan, B.I. Eltutan, S. Genc 2019, 'Microglial phenotypes are determined by variable intracellular hydrogen peroxide concentrations', The XIV European Meeting on Glial Cells in Health and Disease, Porto, Portugal, July 10, 2019 .

Tugba Üçüncü Egeli, Funda Tüzün, Devrim Yağmur Durur, Uğur Tüfekçi, Cemre Ural, Merve Cengiz, Zahide Çavdar, Pembe Keskinoğlu, Şermin Genç, Nuray Duman, Hasan Özkan 2019, 'İnfantil Kolik Bir Biyoritim Bozukluğu mudur?', 27. Ulusal Neonatoloji Kongresi, Antalya, April 3, 2019 .

Total : 6

Projects

The Scientific and Technological Research Council of Turkey - TUBITAK - RD : Impact of Redox Signaling on Wnt/beta-catenin Dependant Microglial Polarization And Concomitant Neural Stem Cell Differentiation in Zebrafish And Three Dimentional Tissue Culture Models, Ongoing

Health Institutes of Turkey- TUSEB - RD : Nörolojik, Metabolik, Dejeneratif Hastalıklar için Biyolojik Örneklemin Oluşturulması, Funded, Not Started

The Scientific and Technological Research Council of Turkey - TUBITAK - RD : Alzheimer Hastalığında Eflamatuar Yanıtları Belirlemek İçin Doğrudan Dönüştürme Yoluyla Mononükleer Hücrelerden Kaynaklı Mikroglia, Ongoing

The Scientific and Technological Research Council of Turkey - TUBITAK - RD : Effects of polarized microglia derived exosomal miRNAs on neuronal differentiation, Ongoing

The Scientific and Technological Research Council of Turkey - TUBITAK - RD : In vivo and in vitro effects of bilirubin on NRLP3 inflammatory activation, Finished

The Scientific and Technological Research Council of Turkey - TUBITAK - RD : The Role of Long Noncoding RNA NEAT1 in Regulation of Microglial NLRP3 Inflammasome Activation, Ongoing

Awards

  • Medical Science Award by Eczacıbaşı, 2017

Academic Memberships

  • The Science Academy, Turkey, 2018

Contact

Genc Lab. on Neurodegeneration and Neuroprotection

Research Group Leader

Şermin GENÇ
sermin.genc@ibg.edu.tr
+90 232 299 41 00 (5121)