IBG Affiliated : 72

Yasar Akdogan, Sumeyra Cigdem Sozer , Cansu Akyol , Merve Basol , Cigdem Karakoyun, Gulcin Cakan-Akdogan*. Synthesis of albumin nanoparticles in a water-miscible ionic liquid system, and their applications for chlorambucil delivery to cancer cells. Journal of Molecular Liquids. 2022 December; 367 (Part B): 120575. doi:10.1016/j.molliq.2022.120575.

Alotaibi H. The transcription factor ELF5 is essential for early preimplantation development. Molecular biology reports. 2022 December. doi:10.1007/s11033-022-08217-z.

Erguven M, Cornelissen NV, Peters A, Karaca E, Rentmeister A. Enzymatic Generation of Double-Modified AdoMet Analogues and Their Application in Cascade Reactions with Different Methyltransferases. Chembiochem : a European journal of chemical biology. 2022 December; 23 (24): e202200511. doi:10.1002/cbic.202200511.

Teke Kısa P, Güzel O, Arslan N, Demir K. Positive effects of ketogenic diet on weight control in children with obesity due to Prader-Willi syndrome. Clinical endocrinology. 2022 December. doi:10.1111/cen.14864.

Düzenli-Öztürk S, Hünerli-Gündüz D, Emek-Savaş DD, Olichney J, Yener GG, Ergenç Hİ. Taxonomically-related Word Pairs Evoke both N400 and LPC at Long SOA in Turkish. Journal of psycholinguistic research. 2022 December; 51 (6): 1431-1451. doi:10.1007/s10936-022-09907-2.

Mengyuan Dai, Miao Liu, Hua Yang, Can Küçük, Hua You. New insights into epigenetic regulation of resistance to PD-1/PD-L1 blockade cancer immunotherapy: mechanisms and therapeutic opportunities. Experimental hematology & oncology. 2022 November. doi:10.1186/s40164-022-00356-0.

Sagkrioti E, Biz GM, Takan I, Asfa S, Nikitaki Z, Zanni V, Kars RH, Hellweg CE, Azzam EI, Logotheti S, Pavlopoulou A, Georgakilas AG. Radiation Type- and Dose-Specific Transcriptional Responses across Healthy and Diseased Mammalian Tissues. Antioxidants (Basel, Switzerland). 2022 November; 11 (11). doi:10.3390/antiox11112286.

Yilmaz IC, Dunuroglu E, Ayanoglu IC, Ipekoglu EM, Yildirim M, Girginkardesler N, Ozbel Y, Toz S, Ozbilgin A, Aykut G, Gursel I, Gursel M. Leishmania kinetoplast DNA contributes to parasite burden in infected macrophages: Critical role of the cGAS-STING-TBK1 signaling pathway in macrophage parasitemia. Frontiers in immunology. 2022 November; 13: 1007070. doi:10.3389/fimmu.2022.1007070.

Fide E, Hünerli-Gündüz D, Öztura İ, Yener GG. Hyperconnectivity matters in early-onset Alzheimer's disease: a resting-state EEG connectivity study. Neurophysiologie clinique = Clinical neurophysiology. 2022 November; 52 (6): 459-471. doi:10.1016/j.neucli.2022.10.003.

Kokturk M, Yıldırım S, Yigit A, Ozhan G, Bolat I, Alma, MH, Menges N, Atamanalp M and Alak G.. What is the eco-toxicological level and effects of Graphene oxide-Boramidic Acid (GO-ED-BA NP)? : In vivo study on Zebrafish embryo/larvae. Journal of Environmental Chemical Engineering. 2022 October; 10 (5): 108443. doi:10.1016/j.jece.2022.108443.

Arshinchi Bonab R, Asfa S, Kontou P, Karakülah G, Pavlopoulou A. Identification of neoplasm-specific signatures of miRNA interactions by employing a systems biology approach. PeerJ. 2022 October; 10: e14149. doi:10.7717/peerj.14149.

Turker Burhan M, Ersoy N, Bagriyanik HA, Tozburun S. Guide mapping for effective superficial photothermal coagulation of the esophagus using computer simulations with ex vivo sheep model validation study. Lasers in surgery and medicine. 2022 October; 54 (8): 1116-1129. doi:10.1002/lsm.23595.

Bedir Irem Eltutan, Cagla Kiser, İlkcan Ercan, Kemal Ugur Tufekci, Defne Engur, Sermin Genc, Abdullah Kumral. In vitro effects of H2O2 on neural stem cell differentiation. In Vitro Cellular & Developmental Biology - Animal. 2022 October. doi:10.1007/s11626-022-00723-5.

Erguven M, Kilic S, Karaca E, Diril MK.. Genetic complementation screening and molecular docking give new insight on phosphorylation-dependent Mastl kinase activation. Journal of Biomolecular Structure and Dynamics. 2022 October. doi:10.1080/07391102.2022.2131627.

Atalay EB, Kayali HA. The elevated D-2-hydroxyglutarate level found as a characteristic metabolic change of colon cancer in both in vitro and in vivo models. Biochemical and biophysical research communications. 2022 October; 627: 191-199. doi:10.1016/j.bbrc.2022.08.019.

Esmeray Sönmez, Esra, Tevfik Hatipoğlu, Deniz Kurşun, Xiaozhou Hu, Burcu Akman, Hongling Yuan, Ayça Erşen Danyeli, İnci Alacacıoğlu, Sermin Özkal, Aybüke Olgun, Taner Kemal Erdağ, Hua You, and Can Küçük. Whole Transcriptome Sequencing Reveals Cancer-Related, Prognostically Significant Transcripts and Tumor-Infiltrating Immunocytes in Mantle Cell Lymphoma. Cells. 2022 October; 11 (21): 3394. doi:10.3390/cells11213394.

Pizzamiglio C, Pitceathly RDS, Lunn MP, Brady S, De Marchi F, Galan L, Heckmann JM, Horga A, Molnar MJ, Oliveira ASB, Pinto WBVR, Primiano G, Santos E, Schoser B, Servidei S, Sgobbi Souza PV, Venugopalan V, Hanna MG, Dimachkie MM, Machado PM, Neuromuscular Diseases and COVID-19 Study Group. Factors associated with the severity of COVID-19 outcomes in people with neuromuscular diseases: Data from the International Neuromuscular COVID-19 Registry. European journal of neurology. 2022 October. doi:10.1111/ene.15613.

Toy HI, Yildiz AB, Tasdemir Kahraman D, Ilhan S, Dikensoy O, Bayram H. Capsaicin suppresses ciliary function, while inducing permeability in bronchial epithelial cell cultures of COPD patients. Frontiers in pharmacology. 2022 October; 13: 996046. doi:10.3389/fphar.2022.996046.

Manda G, Milanesi E, Genc S, Niculite CM, Neagoe IV, Tastan B, Dragnea EM, Cuadrado A. Pros and cons of NRF2 activation as adjunctive therapy in rheumatoid arthritis. Free radical biology & medicine. 2022 September; 190: 179-201. doi:10.1016/j.freeradbiomed.2022.08.012.

Gulcin Cakan-Akdogan*, Esra Ersoz, Emine Gelinci. An in vivo zebrafish model reveals circulating tumor cell targeting capacity of serum albumin nanoparticles. Journal of Drug Delivery Science and Technology. 2022 September; 75: 103658. doi:10.1016/j.jddst.2022.103658.

İbrahim Akkaya; Serhat Tozburun. A 1060 nm stretched-pulse mode-locked wavelength-swept laser source providing an A-scan rate of 20 MHz. Optik. 2022 September; 266: 169648. doi:10.1016/j.ijleo.2022.169648.

Kahyaoglu S, Tarik Atmaca H. Experimental infection of Mongolian gerbils with Toxoplasma gondii: pathological and immunohistochemical evaluations. Veterinary research forum : an international quarterly journal. 2022 September; 13 (3): 293-299. doi:10.30466/vrf.2020.126993.2937.

Logotheti S, Pavlopoulou A, Marquardt S, Takan I, Georgakilas AG, Stiewe T. p73 isoforms meet evolution of metastasis. Cancer metastasis reviews. 2022 August. doi:10.1007/s10555-022-10057-z.

Kokturk M, Yıldırım S, Atamanalp M, Calimli MH, Nas MS, Bolat I, Ozhan G, and Alak G. Assessment of oxidative DNA damage, apoptosis and histopathological alterations on zebrafish exposed with green silver nanoparticle. Chemistry and Ecology. 2022 August; 38 (7): 655-60. doi:10.1080/02757540.2022.2108808.

Kasal K, Güven S, Utine CA. Current methodology and cell sources for lacrimal gland tissue engineering. Experimental eye research. 2022 August; 221: 109138. doi:10.1016/j.exer.2022.109138.

Engin Köse 1, Elçin Çağatay 2, Tutku Yaraş 3, Pelin Teke Kısa 4, Seminay Güler 5, Zümrüt Arslan Gülten 4, Mesut Akarsu 5, Yavuz Oktay 6, Hülya Ayar Kayalı 7, Nur Arslan 4. Could lysosomal acid lipase enzyme activity be used for clinical follow-up in cryptogenic cirrhosis?. Turkish Journal of Medical Sciences. 2022 August; 52 (4): 1075-1084. doi:10.55730/1300-0144.5410.

Fide E, Yerlikaya D, Öz D, Öztura İ, Yener G. Normalized Theta but Increased Gamma Activity after Acetylcholinesterase Inhibitor Treatment in Alzheimer's Disease: Preliminary qEEG Study. Clinical EEG and neuroscience. 2022 August: 15500594221120723. doi:10.1177/15500594221120723.

Bal SH, Sağdilek E, Karaçay M, Kızmaz MA, Kumaş LT, Can FE, Yıldırım M, Canavar-Yıldırım T, Koşay-Gülkaya D, Yöyen-Ermiş D, Budak F, Heper Y, Gürsel İ, Oral HB. The effect of exosomes released from apheresis platelet concentrates under the impact of gamma irradiation and storage time upon platelet aggregation and hemostasis. Blood transfusion = Trasfusione del sangue. 2022 August. doi:10.2450/2022.006-22.

Menteş M, Karakuzulu BB, Uçar GB, Yandım C. Comparative molecular dynamics analyses on PIK3CA hotspot mutations with PI3Kα specific inhibitors and ATP. Computational biology and chemistry. 2022 August; 99: 107726. doi:10.1016/j.compbiolchem.2022.107726.

Ceylan M, Erbak Yilmaz H, Narin F, Tatakis DN, Saglam M. Gingival crevicular fluid lipocalin-2 and semaphorin3A in stage III periodontitis: Non-surgical periodontal treatment effects. Journal of periodontal research. 2022 August; 57 (4): 724-732. doi:10.1111/jre.12995.

Tarakcioglu E, Tastan B, Arioz BI, Tufekci KU, Genc S. Melatonin Alters the miRNA Transcriptome of Inflammasome Activation in Murine Microglial Cells. Neurochemical Research. 2022 July. doi:10.1007/s11064-022-03674-1.

Fontaine E, Papin C, Martinez G, Le Gras S, Nahed RA, Héry P, Buchou T, Ouararhni K, Favier B, Gautier T, Sabir JSM, Gerard M, Bednar J, Arnoult C, Dimitrov S, Hamiche A. Dual role of histone variant H3.3B in spermatogenesis: positive regulation of piRNA transcription and implication in X-chromosome inactivation. Nucleic acids research. 2022 July; 50 (13): 7350-7366. doi:10.1093/nar/gkac541.

van der Knoop MM, Maroofian R, Fukata Y, van Ierland Y, Karimiani EG, Lehesjoki AE, Muona M, Paetau A, Miyazaki Y, Hirano Y, Selim L, de França M, Fock RA, Beetz C, Ruivenkamp CAL, Eaton AJ, Morneau-Jacob FD, Sagi-Dain L, Shemer-Meiri L, Peleg A, Haddad-Halloun J, Kamphuis DJ, Peeters-Scholte CMPCD, Kurul SH, Horvath R, Lochmüller H, Murphy D, Waldmüller S, Spranger S, Overberg D, Muir AM, Rad A, Vona B, Abdulwahad F, Maddirevula S, Povolotskaya IS, Voinova VY, Gowda VK, Srinivasan VM, Alkuraya FS, Mefford HC, Alfadhel M, Haack TB, Striano P, Severino M, Fukata M, Hilhorst-Hofstee Y, Houlden H. Biallelic ADAM22 pathogenic variants cause progressive encephalopathy and infantile-onset refractory epilepsy. Brain : a journal of neurology. 2022 July; 145 (7): 2301-2312. doi:10.1093/brain/awac116.

Yener G, Hünerli-Gündüz D, Yıldırım E, Aktürk T, Başar-Eroğlu C, Bonanni L, Del Percio C, Farina F, Ferri R, Güntekin B, Hajós M, Ibáñez A, Jiang Y, Lizio R, Lopez S, Noce G, Parra MA, Randall F, Stocchi F, Babiloni C. Treatment effects on event-related EEG potentials and oscillations in Alzheimer's disease. International journal of psychophysiology : official journal of the International Organization of Psychophysiology. 2022 July; 177: 179-201. doi:10.1016/j.ijpsycho.2022.05.008.

Hatipoğlu T, Esmeray Sönmez E, Hu X, Yuan H, Danyeli AE, Şeyhanlı A, Önal-Süzek T, Zhang W, Akman B, Olgun A, Özkal S, Alacacıoğlu İ, Özcan MA, You H, Küçük C. Plasma Concentrations and Cancer-Associated Mutations in Cell-Free Circulating DNA of Treatment-Naive Follicular Lymphoma for Improved Non-Invasive Diagnosis and Prognosis. Frontiers in Oncology. 2022 June; 12: 870487. doi:10.3389/fonc.2022.870487.

Okay K, Varış PÜ, Miral S, Pavlopoulou A, Oktay Y, Karakülah G. Whole Genome Analysis of Dizygotic Twins With Autism Reveals Prevalent Transposon Insertion Within Neuronal Regulatory Elements: Potential Implications for Disease Etiology and Clinical Assessment. Journal of autism and developmental disorders. 2022 June. doi:10.1007/s10803-022-05636-6.

Cingöz S, Soydemir D, Öner TÖ, Karaca E, Özden B, Kurul SH, Bayram E, University of Washington Center for Mendelian Genomics, Coe BP, Nickerson DA, Eichler EE. Novel biallelic variants affecting the OTU domain of the gene OTUD6B associate with severe intellectual disability syndrome and molecular dynamics simulations. European journal of medical genetics. 2022 June; 65 (6): 104497. doi:10.1016/j.ejmg.2022.104497.

M. Ekin Azbazdar, Görkem Akıncı, Erkan Güler, Zeynep Ahsen Koçer. The effect of sediment composition and polyethylene glycol precipitation on the detection limit of H6N2 influenza virus in sediment samples. Marine and Life Sciences. 2022 June; 4 (1): 53-62. doi:10.51756/marlife.1091169.

Ozkur M, Benlier N, Takan I, Vasileiou C, Georgakilas AG, Pavlopoulou A, Cetin Z, Saygili EI. Ginger for Healthy Ageing: A Systematic Review on Current Evidence of Its Antioxidant, Anti-Inflammatory, and Anticancer Properties. Oxidative Medicine and Cellular Longevity. 2022 May; 2022: 4748447. doi:10.1155/2022/4748447.

Yandım C, Karakülah G. Repeat expression is linked to patient survival and exhibits single nucleotide variation in pancreatic cancer revealing LTR70:r.879A>G. Gene. 2022 May; 822: 146344. doi:10.1016/j.gene.2022.146344.

Guler S, Kayali HA, Sadan EO, Sen B, Subasi E. Half-Sandwich Arene Ruthenium(II) Thiosemicarbazone Complexes: Evaluation of Anticancer Effect on Primary and Metastatic Ovarian Cancer Cell Lines. Frontiers in pharmacology. 2022 May; 13: 882756. doi:10.3389/fphar.2022.882756.

Ertürk Zararsız G, Bolat S, Cephe A, Kochan N, Yerlitaş Sİ, Doğan HO, Zararsız G. Validation of Friedewald, Martin-Hopkins and Sampson low-density lipoprotein cholesterol equations. PloS one. 2022 May; 17 (5): e0263860. doi:10.1371/journal.pone.0263860.

Cadet J, Angelov D, Wagner JR. Hydroxyl radical is predominantly involved in oxidatively generated base damage to cellular DNA exposed to ionizing radiation. International journal of radiation biology. 2022 May: 1-7. doi:10.1080/09553002.2022.2067363.

Yilmaz HE, Yilmaz M, Tangirala VA, Spring K. Awareness of surgical smoke risks and assessment of safety practices during the Covid-19 pandemic. The National medical journal of India. 2022 May; 35 (3): 189-190. doi:10.25259/NMJI-35-3-189.

Yagmur Toktay, Bengisu Dayanc, Serif Senturk. Engineering and Validation of a Dual Luciferase Reporter System for Quantitative and Systematic Assessment of Regulatory Sequences in Chinese Hamster Ovary Cells. Scientific Reports. 2022 April; 12. doi:10.1038/s41598-022-09887-2.

Guneri-Sozeri PY, Erkek-Ozhan S. Identification of the gene expression changes and gene regulatory aspects in ELF3 mutant bladder cancer. Molecular biology reports. 2022 April; 49 (4): 3135-3147. doi:10.1007/s11033-022-07145-2.

Faustino D, Brinkmeier H, Logotheti S, Jonitz-Heincke A, Yilmaz H, Takan I, Peters K, Bader R, Lang H, Pavlopoulou A, Pützer BM, Spitschak A. Novel integrated workflow allows production and in-depth quality assessment of multifactorial reprogrammed skeletal muscle cells from human stem cells. Cellular and molecular life sciences : CMLS. 2022 April; 79 (5): 229. doi:10.1007/s00018-022-04264-8.

Hesaraki M, Bora U, Pahlavan S, Salehi N, Mousavi SA, Barekat M, Rasouli SJ, Baharvand H, Ozhan G, Totonchi M. A Novel Missense Variant in Actin Binding Domain of MYH7 Is Associated With Left Ventricular Noncompaction. Frontiers in cardiovascular medicine. 2022 April; 9: 839862. doi:10.3389/fcvm.2022.839862.

Durur DY, Tastan B, Ugur Tufekci K, Olcum M, Uzuner H, Karakülah G, Yener G, Genc S. Alteration of miRNAs in Small Neuron-Derived Extracellular Vesicles of Alzheimer's Disease Patients and the Effect of Extracellular Vesicles on Microglial Immune Responses. Journal of Molecular Neuroscience : MN. 2022 April; 72: 1182-1194. doi:10.1007/s12031-022-02012-y.

Korkmaz A, Sag D. Medicinal Plant Tinaspora Cordifolia Polarizes Primary Human Macrophages into an M1 Phenotype. Turkish Journal of Immunology. 2022 April; 10 (1): 34-45. doi:10.4274/tji.galenos.2022.70783.

Seda Nur Topkaya, Idil Karaca Acari, Huseyin Oguzhan Kaya, Imren Ozcan, Suleyman Koytepe, and Arif E. Cetin. Interaction of Nickel Ferrite Nanoparticles with Nucleic Acids. Colloids and Surfaces B: Biointerfaces. 2022 March; 211: 112282. doi:10.1016/j.colsurfb.2021.112282.

Toyran N. Alotaibi H.. Evaluating The Transcriptional Regulation of Cdh1 by Grhl3 in Different Cellular Models. Journal of The Institute of Science and Technology. 2022 March; 12 (1): 446-454. doi:10.21597/jist.963916.

Unuvar Purcu D, Korkmaz A, Gunalp S, Helvaci DG, Erdal Y, Dogan Y, Suner A, Wingender G, Sag D. Effect of stimulation time on the expression of human macrophage polarization markers. PloS one. 2022 March; 17 (3): e0265196. doi:10.1371/journal.pone.0265196.

Geronikolou SA, Takan I, Pavlopoulou A, Mantzourani M, Chrousos GP. Thrombocytopenia in COVID‑19 and vaccine‑induced thrombotic thrombocytopenia. International Journal of Molecular Medicine. 2022 March; 49 (3): 1-19. doi:10.3892/ijmm.2022.5090.

Bora Tastan, Burak I. Arioz, Sermin Genc. Targeting NLRP3 Inflammasome With Nrf2 Inducers in Central Nervous System Disorders. Frontiers in Immunology. 2022 March. doi:10.3389/fimmu.2022.865772.

Arslan M, Karadag M, Onal E, Gelinci E, Cakan-Akdogan G, Kalyoncu S. Effect of non-repetitive linker on in vitro and in vivo properties of an anti-VEGF scFv. Scientific reports. 2022 March; 12 (1): 5449. doi:10.1038/s41598-022-09324-4.

Karaca E, Prévost C, Sacquin-Mora S. Modeling the Dynamics of Protein-Protein Interfaces, How and Why?. Molecules (Basel, Switzerland). 2022 March; 27 (6): 1841. doi:10.3390/molecules27061841.

Utine CA, Arıkan G, Yardım E, Günenç Ü. Management of glaucoma with Boston type 1 keratoprosthesis. Arquivos brasileiros de oftalmologia. 2022 March. doi:10.5935/0004-2749.20230026.

Iscan E, Karakülah G, Ekin U, Ozturk M, Uzuner H, Suner A. [TAp73α is Upregulated in the Most Common Human Cancers]. Molekuliarnaia biologiia. 2022 March; 56 (2): 320. doi:10.31857/S0026898422020082.

Medine Zeynep Gungor, Merve Uysal, Serif Senturk. The Bright and the Dark Side of TGF-β Signaling in Hepatocellular Carcinoma: Mechanisms, Dysregulation, and Therapeutic Implications. Cancers. 2022 February; 14 (4): 940. doi:10.3390/cancers14040940.

Demirci Y, Heger G, Katkat E, Papatheodorou I, Brazma A, Ozhan G. Brain Regeneration Resembles Brain Cancer at Its Early Wound Healing Stage and Diverges From Cancer Later at Its Proliferation and Differentiation Stages. Frontiers in cell and developmental biology. 2022 February; 10: 813314. doi:10.3389/fcell.2022.813314.

M. Kokturk, S. Yıldırım, M. H. Calimli, M. S. Nas, F. Ibaokurgil, G. Ozhan, M. Atamanalp & G. Alak. Perspective on green synthesis of RP-Pd/AC NPs: characterization, embryonic and neuronal toxicity assessment. International Journal of Environmental Science and Technology. 2022 February. doi:10.1007/s13762-022-04005-1.

Ezber A, Taşdemir İ, Yılmaz HE, Narin F, Sağlam M. Different application procedures of Nd:YAG laser as an adjunct to scaling and root planning in smokers with stage III grade C periodontitis: a single-blind, randomized controlled trial. Irish journal of medical science. 2022 February. doi:10.1007/s11845-022-02940-z.

Erden-Karaoğlan F, Karaoğlan M, Yılmaz G, Yılmaz S, İnan M. Deletion analysis of Pichia pastoris alcohol dehydrogenase 2 (ADH2) promoter and development of synthetic promoters. Biotechnology journal. 2022 February; 17 (2): e2100332. doi:10.1002/biot.202100332.

Zhiliang Zhang, Feng Zhao1, Renxian Gao, Chih-Yu Jao, Churong Ma, Jie Li 1, Xiangping Li, Bai-Ou Guan, Arif E. Cetin, Kai Chen. Rayleigh Anomaly-Enabled Mode Hybridization in Gold Nanohole Arrays by Scalable Colloidal Lithography for Ultra-sensitive Biosensing. Nanophotonics. 2022 January. doi:10.1515/nanoph-2021-0563.

Martin Kuiper, Joseph Bonello, Jesualdo T.Fernández-Breis, PhilippBucher, Matthias E.Futschik, Pascale Gaudet, Ivan V. Kulakovskiy, Luana Licata, Colin Logie, Ruth C.Lovering, Vsevolod J.Makeev, Sandra Orchard, Simona Panni, Livia Perfetto, David Santo, Stefan Schulz, Steven Vercruyssea, Daniel R. Zerbino, Astrid Lægreid, The GRECO Consortium. The gene regulation knowledge commons: the action area of GREEKC. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 2022 January; 1865 (1): 194768. doi:10.1016/j.bbagrm.2021.194768.

Sengez B, Carr BI, Alotaibi H. EMT and Inflammation: Crossroads in HCC. Journal of gastrointestinal cancer. 2022 January. doi:10.1007/s12029-021-00801-z.

Posani E, Dilucca M, Forcelloni S, Pavlopoulou A, Georgakilas AG, Giansanti A. Temporal evolution and adaptation of SARS-CoV-2 codon usage. Frontiers in bioscience (Landmark edition). 2022 January; 27 (1): 13. doi:10.31083/j.fbl2701013.

Hani Alotaibi. Crif1 is Required for Proper Mesenchymal to Epithelial Transition. Cumhuriyet Science Journal. 2022 January; 43 (2): 165. doi:10.17776/csj.1062126.

Meryem Beyza Avci, Rabia Hamurcu, Ozge Ada Bozbas, Ege Gurman, Arif E. Cetin, Ebru Sayilgan. Design of Steady-State Visually-Evoked Potential Based Brain-Computer Interface System. Journal of Intelligent Systems With Applications. 2022 January; 5 (2): 86-89. doi:10.54856/jiswa.202212214.

Arlt A, Kohlschmidt N, Hentschel A, Bartels E, Groß C, Töpf A, Edem P, Szabo N, Sickmann A, Meyer N, Schara-Schmidt U, Lau J, Lochmüller H, Horvath R, Oktay Y, Roos A, Hiz S. Novel insights into PORCN mutations, associated phenotypes and pathophysiological aspects. Orphanet journal of rare diseases. 2022 January; 17 (1): 29. doi:10.1186/s13023-021-02068-w.

HIZ, AYŞE SEMRA; KILIÇ, SEVAL; BADEMCİ, GÜNEY; KARAKULAK, TÜLAY; ERDOĞAN, AYBİKE; YÜCEL, BURCU ÖZDEN; YAZICIOĞLU, ÇİĞDEM ERESEN; BAĞRIYANIK, ŞERİFE ESRA ERDAL; YİŞ, ULUÇ; TEKİN, MUSTAFA; KARAKÜLAH, GÖKHAN; EREK, EZGİ KARACA; and ÖZTÜRK, MEHMET. VARS1 Mutations Associated with Neurodevelopmental Disorder Are Located on A Short Amino Acid Stretch of The Anticodon-Binding Domain. Turkish Journal of Biology. 2022 January; 46 (6): 458-464. doi:10.55730/1300-0152.2631.

IBG Affiliated : 100

Fanfan Hao, Seyit Kale, Stefan Dimitrov, Jeffrey J Hayes. Unraveling linker histone interactions in nucleosomes. Current Opinion in Structural Biology. 2021 December; 71: 87-93. doi:10.1016/j.sbi.2021.06.001.

Hani Alotaibi. Transcriptional impact of E-cadherin loss on embryonic stem cells. Jordan Journal of Biological Sciences. 2021 December; 14 (5). doi:10.54319/jjbs/140524.

Tugce Batur, Ayse Argundogan, Umur Keles, Zeynep Mutlu, Hani Alotaibi, Serif Senturk, Mehmet Ozturk. AXL knock-out in SNU475 hepatocellular carcinoma cells provides evidence for lethal effect associated with G2 arrest and polyploidization. International Journal of Molecular Sciences. 2021 December; 22 (24): 13247. doi:10.3390/ijms222413247.

Oveisi M, Shukla M, Seymen N, Ohno M, Taniguchi Y, Nahata S, Loos R, Mufti GJ, Allshire RC, Dimitrov S, Karimi MM. iNucs: Inter-Nucleosome Interactions. Bioinformatics (Oxford, England). 2021 December; 37 (23): 4562-4563. doi:10.1093/bioinformatics/btab698.

Engur D, Kumral A. New perpective for an old problem: extracellular vesicle based management of respiratory distress syndrome. Drug delivery. 2021 December; 28 (1): 2310-2312. doi:10.1080/10717544.2021.1995079.

Eray A, Erkek-Özhan S. Classification of bladder cancer cell lines according to regulon activity. Turkish journal of biology = Turk biyoloji dergisi. 2021 December; 45 (6): 656-666. doi:10.3906/biy-2107-72.

Kuruş M, Akbari S, Eskier D, Bursalı A, Ergin K, Erdal E, Karakülah G. Transcriptome Dynamics of Human Neuronal Differentiation From iPSC. Frontiers in cell and developmental biology. 2021 December; 9: 727747. doi:10.3389/fcell.2021.727747.

Ayvaz I, Sunay D, Sariyar E, Erdal E, Karagonlar ZF. Three-Dimensional Cell Culture Models of Hepatocellular Carcinoma - a Review. Journal of gastrointestinal cancer. 2021 December. doi:10.1007/s12029-021-00772-1.

Pavlopoulou A, Asfa S, Gioukakis E, Mavragani IV, Nikitaki Z, Takan I, Pouget JP, Harrison L, Georgakilas AG. In Silico Investigation of the Biological Implications of Complex DNA Damage with Emphasis in Cancer Radiotherapy through a Systems Biology Approach. Molecules (Basel, Switzerland). 2021 December; 26 (24). doi:10.3390/molecules26247602.

Kemal Ugur Tufekci, Bedir Irem Eltutan, Kamer Burak Isci, Sermin Genc. Resveratrol Inhibits NLRP3 Inflammasome-Induced Pyroptosis and miR-155 Expression in Microglia Through Sirt1/AMPK Pathway. Neurotoxicity Research. 2021 November. doi:10.1007/s12640-021-00435-w.

Ekin U, Yuzugullu H, Ozen C, Korhan P, Bagirsakci E, Yilmaz F, Yuzugullu OG, Uzuner H, Alotaibi H, Kirmizibayrak PB, Atabey N, Karakülah G, Ozturk M. Evaluation of ATAD2 as a Potential Target in Hepatocellular Carcinoma. Journal of gastrointestinal cancer. 2021 November. doi:10.1007/s12029-021-00732-9.

Bora Tastan, Burak I. Arioz, Kemal Ugur Tufekci, Emre Tarakcioglu, Ceren Perihan Gonul, Kursad Genc, Sermin Genc. Dimethyl Fumarate Alleviates NLRP3 Inflammasome Activation in Microglia and Sickness Behavior in LPS-Challenged Mice. Frontiers in Immunology. 2021 November; 12: 4736. doi:10.3389/fimmu.2021.737065.

Korhan P, Tercan Avcı S, Yılmaz Y, Öztemur Islakoğlu Y, Atabey N. Role of Biobanks for Cancer Research and Precision Medicine in Hepatocellular Carcinoma. Journal of gastrointestinal cancer. 2021 November. doi:10.1007/s12029-021-00759-y.

Kisa PT, Uzun OU, Gunduz M, Bulbul FS, Kose E, Arslan N. Frequency and status of depression and anxiety in mothers of children with inborn errors of metabolism with restricted diet, with and without risk of metabolic crises. Archives de pediatrie : organe officiel de la Societe francaise de pediatrie. 2021 November; 28 (8): 702-706. doi:10.1016/j.arcped.2021.09.008.

Cagatay E, Akyildiz V, Ergun Y, Kayali HA. Synthesis of Murrayaquinone-A Derivatives and Investigation of Potential Anticancer Properties. Chemistry & biodiversity. 2021 November; 18 (11): e2100348. doi:10.1002/cbdv.202100348.

Kurul SH, Oktay Y, Töpf A, Szabó NZ, Güngör S, Yaramis A, Sonmezler E, Matalonga L, Yis U, Schon K, Paramonov I, Kalafatcilar İP, Gao F, Rieger A, Arslan N, Yilmaz E, Ekinci B, Edem PP, Aslan M, Özgör B, Lochmüller A, Nair A, O'Heir E, Lovgren AK, Broad Center for Mendelian Genomics., Maroofian R, Houlden H, Polavarapu K, Roos A, Müller JS, Hathazi D, Chinnery PF, Laurie S, Beltran S, Lochmüller H, Horvath R. High diagnostic rate of trio exome sequencing in consanguineous families with neurogenetic diseases. Brain : a journal of neurology. 2021 November. doi:10.1093/brain/awab395.

Teke Kisa P, Eroglu Erkmen S, Bahceci H, Arslan Gulten Z, Aydogan A, Karalar Pekuz OK, Yuce Inel T, Ozturk T, Uysal S, Arslan N. Efficacy of Phenylalanine- and Tyrosine-Restricted Diet in Alkaptonuria Patients on Nitisinone Treatment: Case Series and Review of Literature. Annals of nutrition & metabolism. 2021 November: 1-13. doi:10.1159/000519813.

Raje S, Reddy N, Jerbi H, Randhawa P, Tsaramirsis G, Shrivas NV, Pavlopoulou A, Stojmenović M, Piromalis D. Applications of Healthcare Robots in Combating the COVID-19 Pandemic. Applied bionics and biomechanics. 2021 November; 2021: 7099510. doi:10.1155/2021/7099510.

Circir A, Koksal Bicakci G, Savas B, Doken DN, Henden ŞO, Can T, Karaca E, Erson-Bensan AE. A C-term truncated EIF2Bγ protein encoded by an intronically polyadenylated isoform introduces unfavorable EIF2Bγ-EIF2γ interactions. Proteins. 2021 November. doi:10.1002/prot.26284.

Arif E. Cetin, Zeynep A. Kocer, Seda Nur Topkaya, Ziya Ata Yazici. Handheld Plasmonic Biosensor for Virus Detection in Field-Settings. Sensors and Actuators B: Chemical. 2021 October; 344: 130301. doi:10.1016/j.snb.2021.130301.

Gökhan Karakülah, Cİhangir Yandım. Identification of differentially expressed genomic repeats in primary hepatocellular carcinoma and their potential links to biological processes and survival. Turkish Journal of Biology. 2021 October; 45: 599-612. doi:10.3906/biy-2104-13.

Kiser C, Gonul CP, Olcum M, Genc S. Inhibitory effects of sulforaphane on NLRP3 inflammasome activation. Molecular immunology. 2021 October; 140: 175-185. doi:10.1016/j.molimm.2021.10.014.

Ozhan, G. Editorial: Wnt Signaling at the Plasma Membrane: Activation, Regulation and Disease Connection. Frontiers in Cell and Developmental Biology. 2021 October; 9: 2994. doi:10.3389/fcell.2021.780163.

Karabicici M, Azbazdar Y, Iscan E, Ozhan G. Misregulation of Wnt Signaling Pathways at the Plasma Membrane in Brain and Metabolic Diseases. Membranes. 2021 October; 11 (11): 844. doi:10.3390/membranes11110844.

Utine CA, Kaya M, Kasal K. Wide-field vitreoretinal surgery in eyes with Boston type 1 keratoprosthesis. International ophthalmology. 2021 October. doi:10.1007/s10792-021-02083-7.

Richard EM, Bakhtiari S, Marsh APL, Kaiyrzhanov R, Wagner M, Shetty S, Pagnozzi A, Nordlie SM, Guida BS, Cornejo P, Magee H, Liu J, Norton BY, Webster RI, Worgan L, Hakonarson H, Li J, Guo Y, Jain M, Blesson A, Rodan LH, Abbott MA, Comi A, Cohen JS, Alhaddad B, Meitinger T, Lenz D, Ziegler A, Kotzaeridou U, Brunet T, Chassevent A, Smith-Hicks C, Ekstein J, Weiden T, Hahn A, Zharkinbekova N, Turnpenny P, Tucci A, Yelton M, Horvath R, Gungor S, Hiz S, Oktay Y, Lochmuller H, Zollino M, Morleo M, Marangi G, Nigro V, Torella A, Pinelli M, Amenta S, Husain RA, Grossmann B, Rapp M, Steen C, Marquardt I, Grimmel M, Grasshoff U, Korenke GC, Owczarek-Lipska M, Neidhardt J, Radio FC, Mancini C, Claps Sepulveda DJ, McWalter K, Begtrup A, Crunk A, Guillen Sacoto MJ, Person R, Schnur RE, Mancardi MM, Kreuder F, Striano P, Zara F, Chung WK, Marks WA, van Eyk CL, Webber DL, Corbett MA, Harper K, Berry JG, MacLennan AH, Gecz J, Tartaglia M, Salpietro V, Christodoulou J, Kaslin J, Padilla-Lopez S, Bilguvar K, Munchau A, Ahmed ZM, Hufnagel RB, Fahey MC, Maroofian R, Houlden H, Sticht H, Mane SM, Rad A, Vona B, Jin SC, Haack TB, Makowski C, Hirsch Y, Riazuddin S, Kruer MC. Bi-allelic variants in SPATA5L1 lead to intellectual disability, spastic-dystonic cerebral palsy, epilepsy, and hearing loss. American journal of human genetics. 2021 October; 108 (10): 2006-2016. doi:10.1016/j.ajhg.2021.08.003.

Saniye Gul Kaya, Seniz Inanc-Surer, Gulcin Cakan-Akdogan, Gulgun Oktay, Canan Asli Utine, Sibel Kalyoncu. Roles of matrix metalloproteinases in the cornea: A special focus on macular corneal dystrophy. Medicine in Drug Discovery. 2021 September; 11: 100095. doi:10.1016/j.medidd.2021.100095.

Yılmaz H, Toy HI, Marquardt S, Karakülah G, Küçük C, Kontou PI, Logotheti S, Pavlopoulou A. In Silico Methods for the Identification of Diagnostic and Favorable Prognostic Markers in Acute Myeloid Leukemia. International journal of molecular sciences. 2021 September; 22 (17): 9601. doi:10.3390/ijms22179601.

Özbek Y, Fide E, Yener GG. Resting-state EEG alpha/theta power ratio discriminates early-onset Alzheimer's disease from healthy controls. Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology. 2021 September; 132 (9): 2019-2031. doi:10.1016/j.clinph.2021.05.012.

Yetis O, Guner O, Akkaya I, Guneli E, Bagriyanik A, Tozburun S. Vagus nerve bundle stimulation using 1505-nm laser irradiation in an in-vivo rat model. Journal of biophotonics. 2021 September: e202100197. doi:10.1002/jbio.202100197.

Karabicici M, Azbazdar Y, Ozhan G, Senturk S, Firtina Karagonlar Z, Erdal E. Changes in Wnt and TGF-β Signaling Mediate the Development of Regorafenib Resistance in Hepatocellular Carcinoma Cell Line HuH7. Frontiers in cell and developmental biology. 2021 August; 9: 639779. doi:10.3389/fcell.2021.639779.

Kokturk M, Yıldırım S, Nas MS, Ozhan G, Atamanalp M, Bolat I, Calimli MH, Alak G. Investigation of the Oxidative Stress Response of a Green Synthesis Nanoparticle (RP-Ag/ACNPs) in Zebrafish. Biological trace element research. 2021 August. doi:10.1007/s12011-021-02855-3.

Ozden B, Kryshtafovych A, Karaca E. Assessment of the CASP14 assembly predictions. Proteins. 2021 August. doi:10.1002/prot.26199.

Zeynep Güngör, Merve Uysal, Mehmet Öztürk, Şerif Şentürk. Systematic Analysis of Cytostatic TGF-Beta Response in Mesenchymal-Like Hepatocellular Carcinoma Cell Lines. Journal of Gastrointestinal Cancer. 2021 August. doi:10.1007/s12029-021-00704-z.

Geronikolou SA, Pavlopoulou A, Chrousos GP, Cokkinos DV. Interactions Networks for Primary Heart Sarcomas. Cancers. 2021 August; 13 (15): 3882. doi:10.3390/cancers13153882.

Theofylaktou D, Takan I, Karakülah G, Biz GM, Zanni V, Pavlopoulou A, Georgakilas AG. Mining Natural Products with Anticancer Biological Activity through a Systems Biology Approach. Oxidative medicine and cellular longevity. 2021 August; 2021: 9993518. doi:10.1155/2021/9993518.

Louka A, Takan I, Pavlopoulou A, Georgakilas AG. Bioinformatic approaches to the investigation of the atavistic genes implicated in cancer. Frontiers in bioscience (Landmark edition). 2021 August; 26 (8): 279-311. doi:10.52586/4944.

Kemal Ugur Tufekci, Jens Allmer, Kürşat Bora Çarman, Erhan Bayram, Yasemin Topçu, Semra Hız, Şermin Genç, Uluç Yiş. Antiviral microRNA expression signatures are altered in subacute sclerosing panencephalitis. Neurological Sciences and Neurophysiology. 2021 August; 38 (3): 166-172. doi:10.4103/nsn.nsn_57_21.

Babiloni C, Ferri R, Noce G, Lizio R, Lopez S, Lorenzo I, Tucci F, Soricelli A, Nobili F, Arnaldi D, Famà F, Orzi F, Buttinelli C, Giubilei F, Cipollini V, Marizzoni M, Güntekin B, Aktürk T, Hanoğlu L, Yener G, Özbek Y, Stocchi F, Vacca L, Frisoni GB, Del Percio C. Resting State Alpha Electroencephalographic Rhythms Are Differently Related to Aging in Cognitively Unimpaired Seniors and Patients with Alzheimer's Disease and Amnesic Mild Cognitive Impairment. Journal of Alzheimer's disease : JAD. 2021 August; 82 (3): 1085-1114. doi:10.3233/JAD-201271.

Güntekin B, Aktürk T, Arakaki X, Bonanni L, Del Percio C, Edelmayer R, Farina F, Ferri R, Hanoğlu L, Kumar S, Lizio R, Lopez S, Murphy B, Noce G, Randall F, Sack AT, Stocchi F, Yener G, Yıldırım E, Babiloni C. Are there consistent abnormalities in event-related EEG oscillations in patients with Alzheimer's disease compared to other diseases belonging to dementia?. Psychophysiology. 2021 August: e13934. doi:10.1111/psyp.13934.

Gurer DC, Erdogan İ, Ahmadov U, Basol M, Sweef O, Cakan-Akdogan G, Akgül B. Transcriptomics Profiling Identifies Cisplatin-Inducible Death Receptor 5 Antisense Long Non-coding RNA as a Modulator of Proliferation and Metastasis in HeLa Cells. Frontiers in cell and developmental biology. 2021 August; 9: 2248. doi:10.3389/fcell.2021.688855.

Seda Nur Topkaya, Ezgi Turunc, Arif E. Cetin. Multi-Walled Carbon Nanotubes and Gold Nanorod Decorated Biosensor for Detection of microRNA-126. Electroanalysis. 2021 July. doi:10.1002/elan.202100198.

Koçhan N, Eskier D, Suner A, Karakülah G, Oktay Y. Different selection dynamics of S and RdRp between SARS-CoV-2 genomes with and without the dominant mutations. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2021 July; 91: 104796. doi:10.1016/j.meegid.2021.104796.

Okay K, Varış PÜ, Miral S, Ekinci B, Yaraş T, Karakülah G, Oktay Y. Alternative splicing and gene co-expression network-based analysis of dizygotic twins with autism-spectrum disorder and their parents. Genomics. 2021 July; 113 (4): 2561-2571. doi:10.1016/j.ygeno.2021.05.038.

Moumoulidis PT, Pavlopoulou A, Ünal R, Mavragani I, Georgakilas AG, Kyrodimos E. Nodal tumor volume as a prognostic factor for head and neck squamous cell carcinoma: a systematic review. Frontiers in bioscience (Landmark edition). 2021 July; 26 (7): 235-245. doi:10.52586/4937.

Bürhan-Çavuşoğlu P, İscan E, Güneş A, Atabey N, Alkın T. Increased telomerase activity in major depressive disorder with melancholic features: Possible role of pro-inflammatory cytokines and the brain-derived neurotrophic factor. Brain, behavior, & immunity - health. 2021 July; 14: 100259. doi:10.1016/j.bbih.2021.100259.

Şeker M, Özbek Y, Yener G, Özerdem MS. Complexity of EEG Dynamics for Early Diagnosis of Alzheimer's Disease Using Permutation Entropy Neuromarker. Computer methods and programs in biomedicine. 2021 July; 206: 106116. doi:10.1016/j.cmpb.2021.106116.

Alper M, Aydemir T, Köçkar F. [USF1 Suppresses Expression of Fibrillar Type I, II, and III Collagen and pNP Adamts-3 in Osteosarcoma Cells]. Molekuliarnaia biologiia. 2021 July; 55 (4): 634-642. doi:10.31857/S0026898421040030.

Babiloni C, Arakaki X, Bonanni L, Bujan A, Carrillo MC, Del Percio C, Edelmayer RM, Egan G, Elahh FM, Evans A, Ferri R, Frisoni GB, Güntekin B, Hainsworth A, Hampel H, Jelic V, Jeong J, Kim DK, Kramberger M, Kumar S, Lizio R, Nobili F, Noce G, Puce A, Ritter P, Smit DJA, Soricelli A, Teipel S, Tucci F, Sachdev P, Valdes-Sosa M, Valdes-Sosa P, Vergallo A, Yener G. EEG measures for clinical research in major vascular cognitive impairment: recommendations by an expert panel. Neurobiology of aging. 2021 July; 103: 78-97. doi:10.1016/j.neurobiolaging.2021.03.003.

Akbari S, Kunter İ, Azbazdar Y, Ozhan G, Atabey N, Karagonlar ZF, Erdal E. LGR5/R-Spo1/Wnt3a axis promotes stemness and aggressive phenotype in hepatoblast-like hepatocellular carcinoma cell lines. Cellular signalling. 2021 June: 109972. doi:10.1016/j.cellsig.2021.109972.

Maryam Daneshpour, Zhina Mazhari, Melika Haji Mohammadi, Arif E. Cetin, Maedeh Khodamoradi, Amir Reza Aref, Mostafa Azimzadeh, and Seda Nur Topkaya. Review of Current Diagnostics Developed for COVID-19. Analytical and Bioanalytical Chemistry Research. 2021 June; 8 (4): 417-444. doi:10.22036/ABCR.2021.271340.1593.

Arioz BI, Tufekci KU, Olcum M, Durur DY, Akarlar BA, Ozlu N, Bagriyanik HA, Keskinoglu P, Yener G, Genc S. Proteome profiling of neuron-derived exosomes in Alzheimer's disease reveals hemoglobin as a potential biomarker. Neuroscience letters. 2021 June; 755: 135914. doi:10.1016/j.neulet.2021.135914.

Marquardt S, Pavlopoulou A, Takan I, Dhar P, Pützer BM, Logotheti S. A Systems-Based Key Innovation-Driven Approach Infers Co-option of Jaw Developmental Programs During Cancer Progression. Frontiers in cell and developmental biology. 2021 June; 9: 682619. doi:10.3389/fcell.2021.682619.

Burak Ibrahim Arioz, Emre Tarakcioglu, Melis Olcum , Sermin Genc. The Role of Melatonin on NLRP3 Inflammasome Activation in Diseases. Antioxidants. 2021 June; 10 (7): 1020. doi:10.3390/antiox10071020.

Karakulak T, Rifaioglu AS, Rodrigues JPGLM, Karaca E. Predicting the Specificity- Determining Positions of Receptor Tyrosine Kinase Axl. Frontiers in Molecular Biosciences. 2021 June (8:658906). doi:10.3389/fmolb.2021.658906.

Özkan M, Eskiocak YC, Wingender G. Macrophage and dendritic cell subset composition can distinguish endotypes in adjuvant-induced asthma mouse models. PloS one. 2021 June; 16 (6): e0250533. doi:10.1371/journal.pone.0250533.

Utine CA, Birlik M, Özizmirliler D, Karakaş A, Akbulut B, Durak I. TNF-α Inhibitors for the Management of Intractable Corneal Melt: Report of Three Cases and Review of the Literature. Eye & contact lens. 2021 June; 47 (6): 372-377. doi:10.1097/ICL.0000000000000770.

Hasan Akbaba, Gülşah Erel-Akbaba, Serif Senturk. Recruitment of solid lipid nanoparticles for the delivery of CRISPR/Cas9: primary evaluation of anticancer gene editing. Nanomedicine. 2021 May; 16 (12): 963–978. doi:10.2217/nnm-2020-0412.

Topel H, Bağırsakçı E, Yılmaz Y, Güneş A, Bağcı G, Çömez D, Kahraman E, Korhan P, Atabey N. High glucose induced c-Met activation promotes aggressive phenotype and regulates expression of glucose metabolism genes in HCC cells. Scientific Reports. 2021 May; 11 (1): 11376. doi:10.1038/s41598-021-89765-5.

Ayca Karasakal, Sulinay Parlar, Vildan Alptuzun, Arif E. Cetin, and Seda Nur Topkaya. A Novel Molecule: 1-(2,6 dichlorobenzyl)-4-(2-(2-4-hydroxybenzylidene)hydrazinyl)pyridinium chloride and its Interaction with DNAA Novel Molecule: 1-(2,6 dichlorobenzyl)-4-(2-(2-4-hydroxybenzylidene)hydrazinyl)pyridinium chloride and its Interaction with DNA. ELECTROANALYSIS. 2021 May. doi:10.1002/elan.202060597.

Arif E. Cetin, Seda Nur Topkaya, Ozden Yalcin-Ozuysal, Ali Khademhosseini. Refractive Index Sensing For Measuring Single Cell Growth. ACS NANO. 2021 May. doi:10.1021/acsnano.1c04031.

Tufekci KU, Ercan I, Isci KB, Olcum M, Tastan B, Gonul CP, Genc K, Genc S. Sulforaphane inhibits NLRP3 inflammasome activation in microglia through Nrf2-mediated miRNA alteration. Immunology letters. 2021 May. doi:10.1016/j.imlet.2021.03.004.

M Olcum, KU Tufekci, DY Durur, B Tastan, IN Gokbayrak, K Genc, S Genc. Ethyl Pyruvate Attenuates Microglial NLRP3 Inflammasome Activation via Inhibition of HMGB1/NF-κB/miR-223 Signaling. Antioxidants. 2021 May; 10 (5): 745. doi:10.3390/antiox10050745.

Gorkem Liman, Emrecan Yildiz, Hasan Ilhan, Arif E. Cetin, Gokhan Demirel. Hot-Spot Engineering Through Soft Actuators for Surface-Enhanced Raman Spectroscopy (SERS) Applications. ADVANCED OPTICAL MATERIALS. 2021 May. doi:10.1002/adom.202100009.

Kemal Ugur Tufekci, Begum Alural, Emre Tarakcioglu, Tugba San, Sermin Genc. Lithium inhibits oxidative stress-induced neuronal senescence through miR-34a. Molecular Biology Reports. 2021 May. doi:10.1007/s11033-021-06430-w.

Dhasmana D, Veerapathiran S, Azbazdar Y, Nelanuthala AVS, Teh C, Ozhan G, Wohland T. Wnt3 Is Lipidated at Conserved Cysteine and Serine Residues in Zebrafish Neural Tissue. Frontiers in cell and developmental biology. 2021 May; 9: 671218. doi:10.3389/fcell.2021.671218.

Geronikolou SA, Pavlopoulou A, Cokkinos DV, Bacopoulou F, Chrousos GP. Polycystic οvary syndrome revisited: An interactions network approach. European journal of clinical investigation. 2021 May. doi:10.1111/eci.13578.

Özkan M, Eskiocak YC, Wingender G. The IL-10GFP (VeRT-X) mouse strain is not suitable for the detection of IL-10 production by granulocytes during lung inflammation. PloS one. 2021 May; 16 (5): e0247895. doi:10.1371/journal.pone.0247895.

Kisa PT, Gunduz M, Dorum S, Uzun OU, Cakar NE, Yildirim GK, Erdol S, Hismi BO, Tugsal HY, Ucar U, Gorukmez O, Gulten ZA, Kucukcongar A, Bulbul S, Sari I, Arslan N. Alkaptonuria in Turkey: Clinical and molecular characteristics of 66 patients. European journal of medical genetics. 2021 May; 64 (5): 104197. doi:10.1016/j.ejmg.2021.104197.

Arredondo Eve A, Tunc E, Liu YJ, Agrawal S, Erbak Yilmaz H, Emren SV, Akyıldız Akçay F, Mainzer L, Žurauskienė J, Madak Erdogan Z. Identification of Circulating Diagnostic Biomarkers for Coronary Microvascular Disease in Postmenopausal Women Using Machine-Learning Techniques. Metabolites. 2021 May; 11 (6): 339. doi:10.3390/metabo11060339.

Baykal-Köse S, Efe H, Yüce Z. Autophagy Does Not Contribute to TKI Response in a Imatinib-resistant Chronic Myeloid Leukemia Cell Line. Molekuliarnaia biologiia. 2021 May; 55: 573-579. doi:10.31857/S0026898421040042.

Babiloni C, Ferri R, Noce G, Lizio R, Lopez S, Lorenzo I, Panzavolta A, Soricelli A, Nobili F, Arnaldi D, Famà F, Orzi F, Buttinelli C, Giubilei F, Cipollini V, Marizzoni M, Güntekin B, Aktürk T, Hanoğlu L, Yener G, Özbek Y, Stocchi F, Vacca L, Frisoni GB, Del Percio C. Abnormalities of Cortical Sources of Resting State Alpha Electroencephalographic Rhythms are Related to Education Attainment in Cognitively Unimpaired Seniors and Patients with Alzheimer's Disease and Amnesic Mild Cognitive Impairment. Cerebral cortex (New York, N.Y. : 1991). 2021 April; 31 (4): 2220-2237. doi:10.1093/cercor/bhaa356.

Köktürk M, Altindağ F, Ozhan G, Çalimli MH, Nas MS. Textile dyes Maxilon blue 5G and Reactive blue 203 induce acute toxicity and DNA damage during embryonic development of Danio rerio. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 2021 April; 242: 108947. doi:10.1016/j.cbpc.2020.108947.

Yeni Wahyuni Hartati, Seda Nur Topkaya, Shabarni Gaffar, Husein Hernandi Bahti, Arif E. Cetin. Synthesis and Characterization of Nanoceria for Electrochemical Sensing Applications. RSC Advances. 2021 April; 11 (27): 16216-16235. doi:10.1039/D1RA00637A.

Toy HI, Karakülah G, Kontou PI, Alotaibi H, Georgakilas AG, Pavlopoulou A. Investigating Molecular Determinants of Cancer Cell Resistance to Ionizing Radiation Through an Integrative Bioinformatics Approach. Frontiers in cell and developmental biology. 2021 April; 9: 770. doi:10.3389/fcell.2021.620248.

Yavuz Mercan, Gladys Atim, Ahmed E. Kayed, M. Ekin Azbazdar, Ahmed Kandeil, Mohamed A. Ali, Adam Rubrum, Pamela McKenzie, Richard J. Webby, Bernard Erima, Fred Wabwire-Mangen, Qouilazoni A. Ukuli, Titus Tugume, Denis K. Byarugaba, Ghazi Kayali, Mariette F. Ducatez, and Zeynep A. Koçer. Molecular Characterization of Closely Related H6N2 Avian Influenza Viruses Isolated from Turkey, Egypt, and Uganda. Viruses. 2021 April; 13 (4): 607. doi:10.3390/v13040607.

Akkaya HÜ, Yılmaz HE, Narin F, Sağlam M. Evaluation of galectin-3, peptidylarginine deiminase-4 and tumor necrosis factor-α levels in gingival crevicular fluid for periodontal health, gingivitis and stage III grade C periodontitis: A pilot study. Journal of periodontology. 2021 April. doi:10.1002/JPER.21-0137.

Deniz Doğan; Merve Arslan; Tuğçe Uluçay; Sibel Kalyoncu; Stefan Dimitrov; Seyit Kale. CENP-A nucleosome is a sensitive allosteric scaffold for DNA and chromatin factors. Journal of Molecular Biology. 2021 March; 433 (6). doi:10.1016/j.jmb.2020.166789.

Huseyin Oguzhan Kaya, Arif E. Cetin, and Seda Nur Topkaya. Electrochemical Detection of Linagliptin and Its Interaction with DNA. Turkish Journal of Pharmaceutical Sciences. 2021 March. doi:10.4274/tjps.galenos.2021.71354.

Wang Y, Ba HJ, Wen XZ, Zhou M, Küçük C, Tamagnone L, Wei L, You H. A prognostic model for melanoma patients on the basis of immune-related lncRNAs. Aging. 2021 March; 13. doi:10.18632/aging.202730.

Kısa PT, Yildirim GK, Hismi BO, Dorum S, Kusbeci OY, Topak A, Baydan F, Celik FND, Gorukmez O, Gulten ZA, Ekici A, Ozkan S, Yaman A, Arslan N. Patients with cerebrotendinous xanthomatosis diagnosed with diverse multisystem involvement. Metabolic brain disease. 2021 March. doi:10.1007/s11011-021-00714-7.

Utine CA, Özizmirliler D, Kayabaşı M, Günenç Ü. The number of intracorneal ring segments in asymmetric and central cones. Eye and vision (London, England). 2021 March; 8 (1): 10. doi:10.1186/s40662-021-00234-6.

Limoncu H, Boz HE, Zygouris S, Tsolaki M, Giakoumis D, Votis K, Tzovaras D, Öztürk V, Yener GG. A Virtual Reality-Based Screening Test for Cognitive Impairment in Small Vessel Disease. Journal of Alzheimer's disease reports. 2021 March; 5 (1): 161-169. doi:10.3233/ADR-200257.

Muzaffer Dükel, Zehra Tavsan, Hülya Ayar Kayalı. Flavonoids regulate cancer-related cellular signalling via ROS in colon cancer. Process Biochemistry. 2021 February; 101: 11-25. doi:10.1016/j.procbio.2020.10.002.

Tüncel Ö, Kahraman E, Bağci G, Atabey N, Özçelik S. Engineered silica nanoparticles are biologically safe vehicles to deliver drugs or genes to liver cells. Materials science & engineering. C, Materials for biological applications. 2021 February; 119: 111585. doi:10.1016/j.msec.2020.111585.

Huseyin Oguzhan Kaya, Arif E. Cetin, Mostafa Azimzadeh, and Seda Nur Topkaya. Pathogen Detection with Electrochemical Biosensors: Advantages, Challenges and Future Perspectives. Journal of Electroanalytical Chemistry. 2021 February; 882 (1): 114989. doi:10.1016/j.jelechem.2021.114989.

Doğa Eskier, Evren Akalp, Özlem Dalan, Gökhan Karakülah, Yavuz Oktay. Current mutatome of SARS-CoV-2 in Turkey reveals mutations of interest. Turkish Journal of Biology. 2021 February; 45 (1): 104-113. doi:10.3906/biy-2008-56.

Karabicici M, Alptekin S, Fırtına Karagonlar Z, Erdal E. Doxorubicin-induced senescence promotes stemness and tumorigenicity in EpCAM-/CD133- non-stem cell population in hepatocellular carcinoma cell line, HuH-7. Molecular oncology. 2021 February. doi:10.1002/1878-0261.12916.

Evin Iscan, Umut Ekin, Gokhan Yildiz, Ozden Oz, Umur Keles, Aslı Suner, Gulcin Cakan-Akdogan, Gunes Ozhan, Marta Nekulova, Borivoj Vojtesek, Hamdiye Uzuner, Gökhan Karakülah, Hani Alotaibi and Mehmet Ozturk. TAp73β Can Promote Hepatocellular Carcinoma Dedifferentiation. Cancers. 2021 February; 13 (4): 783. doi:10.3390/cancers13040783.

Bora E, Can G, Zorlu N, Ulas G, Inal N, Ozerdem A. Structural dysconnectivity in offspring of individuals with bipolar disorder: The effect of co-existing clinical-high-risk for bipolar disorder. Journal of affective disorders. 2021 February; 281: 109-116. doi:10.1016/j.jad.2020.11.122.

Breda J, Allen LN, Tibet B, Erguder T, Karabulut E, Yildirim HH, Mok A, Wickramasinghe K. Estimating the impact of achieving Turkey's non-communicable disease policy targets: A macro-simulation modelling study. The Lancet regional health. Europe. 2021 February; 1: 100018. doi:10.1016/j.lanepe.2020.100018.

Zhou BR, Feng H, Kale S, Fox T, Khant H, de Val N, Ghirlando R, Panchenko AR, Bai Y. Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms. Molecular cell. 2021 January; 81 (1): 166-182.e6. doi:10.1016/j.molcel.2020.10.038.

Utine CA, Li G, Asbell P, Pflugfelder S, Akpek E. Ocular surface disease associated with dupilumab treatment for atopic diseases. The ocular surface. 2021 January; 19: 151-156. doi:10.1016/j.jtos.2020.05.008.

Dilara Demirci, Bengisu Dayanc, Fatma Aybuke Mazi, Serif Senturk. The Jekyll and Hyde of Cellular Senescence in Cancer. Cells. 2021 January; 10 (2): 208. doi:10.3390/cells10020208.

Ozgun Ozalp, Ozge Cark, Yagmur Azbazdar, Betul Haykir, Gokhan Cucun, Ismail Kucukaylak, Gozde Alkan-Yesilyurt, Erdinc Sezgin and Gunes Ozhan. Nradd acts as a negative feedback regulator of Wnt/ß-catenin signaling and promotes apoptosis. Biomolecules. 2021 January; 11 (1): 100. doi:10.3390/biom11010100.

Serdal Gungor, Yavuz Oktay, Semra Hiz, Álvaro Aranguren-Ibáñez, Ipek Kalafatcilar, Ahmet Yaramis, Ezgi Karaca, Uluc Yis, Ece Sonmezler, Burcu Ekinci, Mahmut Aslan, Elmasnur Yilmaz, Sunitha Balaraju, Nora Szabo, Steven Laurie, Sergi Beltran, Daniel G. MacArthur, Denisa Hathazi, Rita Horvath. Autosomal recessive variants in TUBGCP2 alter the γ-tubulin ring complex leading to neurodevelopmental disease. iScience. 2021 January; 24 (1). doi:10.1016/j.isci.2020.101948.

Yabalak E, Erdoğan Eliuz EA, Nazlı MD. Evaluation of Citrus reticulata essential oil: Chemical composition and antibacterial effectiveness incorporated gelatin on E. coli and S. aureus. International journal of environmental health research. 2021 January: 1-10. doi:10.1080/09603123.2021.1872059.

Azbazdar Y, Karabicici M, Erdal E, Ozhan G. Regulation of Wnt Signaling Pathways at the Plasma Membrane and Their Misregulation in Cancer. Frontiers in cell and developmental biology. 2021 January; 9: 631623. doi:10.3389/fcell.2021.631623.

Erguven M, Karakulak T, Diril MK, Karaca E. How Far Are We from the Rapid Prediction of Drug Resistance Arising Due to Kinase Mutations?. ACS omega. 2021 January; 6 (2): 1254-1265. doi:10.1021/acsomega.0c04672.

S G, Pavlopoulou A, Lambrou GI, Koutelekos J, Cokkinos D, Albanopoulos K, Chrousos GP. Kisspeptin and the Genetic Obesity Interactome. Advances in experimental medicine and biology. 2021 January; 1339: 111-117. doi:10.1007/978-3-030-78787-5_15.

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Sumeyra Cigdem Sozer, Tugce OZmen Egesoy, Merve Basol, Gulcin Cakan-Akdogan, Yasar Akdogan. A simple desolvation method for production of cationic albumin nanoparticles with improved drug loading and cell uptake. Journal of Drug Delivery Science and Technology. 2020 December; 60: 101931. doi:10.1016/j.jddst.2020.101931.

Keleş U, İşcan E, Yılmaz HE, Karakülah G, Suner A, Bal E, Taşdemir N, Cavga AD, Ekin U, Mutlu Z, Kahyaoğlu S, Serdar MA, Atabey N, Ozturk M. Differential expression of full length and N-terminally truncated FAM134B isoforms in normal physiology and cancer. American journal of physiology. Gastrointestinal and liver physiology. 2020 December; 319 (6): G733-G747. doi:10.1152/ajpgi.00094.2020.

Logotheti S, Marquardt S, Richter C, Sophie Hain R, Murr N, Takan I, Pavlopoulou A, Pützer BM. Neural Networks Recapitulation by Cancer Cells Promotes Disease Progression: A Novel Role of p73 Isoforms in Cancer-Neuronal Crosstalk. Cancers. 2020 December; 12 (3789): 1-21. doi:10.3390/cancers12123789.

Ülgen E, Karacan S, Gerlevik U, Can Ö, Bilguvar K, Oktay Y, B Akyerli C, K Yüksel Ş, E Danyeli A, Tihan T, Sezerman OU, Yakıcıer MC, Pamir MN, Özduman K. Mutations and Copy Number Alterations in IDH Wild-Type Glioblastomas Are Shaped by Different Oncogenic Mechanisms. Biomedicines. 2020 December; 8 (12). doi:10.3390/biomedicines8120574.

Gökhan Karakülah, Cihangir Yandım. Signature changes in the expressions of protein-coding genes, lncRNAs, and repeat elements in early and late cellular senescence. Turkish Journal of Biology. 2020 December; 44: 356-370. doi:10.3906/biy-2005-21.

Akman B, Hu X, Liu X, Hatipoğlu T, You H, Chan WC, Küçük C. PRDM1 decreases sensitivity of human NK cells to IL2-induced cell expansion by directly repressing CD25 (IL2RA). Journal of leukocyte biology. 2020 November. doi:10.1002/JLB.2A0520-321RR.

Micili SC, Engür D, Genc S, Ercan I, Soy S, Baysal B, Kumral A. Oxygen exposure in early life activates NLRP3 inflammasome in mouse brain. Neuroscience letters. 2020 November; 738: 135389. doi:10.1016/j.neulet.2020.135389.

Lone IN, Sengez B, Hamiche A, Dimitrov S, Alotaibi H. The Role of Histone Variants in the Epithelial-To-Mesenchymal Transition. Cells. 2020 November; 9 (11). doi:10.3390/cells9112499.

Ersöz H, Ağababaoğlu İ, Taylan İ, Çakır E, Aksun S, Güneli E. Do oral amino acid supplements facilitate the healing of rat lung injuries?. European journal of cardio-thoracic surgery : official journal of the European Association for Cardio-thoracic Surgery. 2020 November; 58 (5): 983-990. doi:10.1093/ejcts/ezaa206.

Pascarelli MT, Del Percio C, De Pandis MF, Ferri R, Lizio R, Noce G, Lopez S, Rizzo M, Soricelli A, Nobili F, Arnaldi D, Famà F, Orzi F, Buttinelli C, Giubilei F, Salvetti M, Cipollini V, Franciotti R, Onofri M, Fuhr P, Gschwandtner U, Ransmayr G, Aarsland D, Parnetti L, Farotti L, Marizzoni M, D'Antonio F, De Lena C, Güntekin B, Hanoğlu L, Yener G, Emek-Savaş DD, Triggiani AI, Paul Taylor J, McKeith I, Stocchi F, Vacca L, Hampel H, Frisoni GB, Bonanni L, Babiloni C. Abnormalities of resting-state EEG in patients with prodromal and overt dementia with Lewy bodies: Relation to clinical symptoms. Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology. 2020 November; 131 (11): 2716-2731. doi:10.1016/j.clinph.2020.09.004.

Arslan M, Karadag D, Kalyoncu S. Conformational changes in a Vernier zone region: Implications for antibody dual specificity. Proteins. 2020 November; 88 (11): 1447-1457. doi:10.1002/prot.25964.

R. Boopathi, S. Dimitrov, A. Hamiche, C. Petosa & J. Bednar. Cryo-electron microscopy of the chromatin fiber. Current Opinion in Structural Biology. 2020 October; 64: 97-103. doi:10.1016/j.sbi.2020.06.016.

Demirci Y, Cucun G, Poyraz YK, Mohammed S, Heger G, Papatheodorou I, Ozhan G. Comparative Transcriptome Analysis of the Regenerating Zebrafish Telencephalon Unravels a Resource With Key Pathways During Two Early Stages and Activation of Wnt/β-Catenin Signaling at the Early Wound Healing Stage. Frontiers in cell and developmental biology. 2020 October; 8: 584604. doi:10.3389/fcell.2020.584604.

Ozgun G, Senturk S, Erkek-Ozhan S. Retinoic acid signaling and bladder cancer: Epigenetic deregulation, therapy and beyond. International journal of cancer. 2020 October. doi:10.1002/ijc.33374.

Eray A, Güneri PY, Yılmaz GÖ, Karakülah G, Erkek-Ozhan S. Analysis of open chromatin regions in bladder cancer links β-catenin mutations and Wnt signaling with neuronal subtype of bladder cancer. Scientific Reports. 2020 October; 10 (1): 18667. doi:10.1038/s41598-020-75688-0.

Babiloni C, Ferri R, Noce G, Lizio R, Lopez S, Soricelli A, Nobili F, Arnaldi D, Famà F, Orzi F, Buttinelli C, Giubilei F, Cipollini V, Marizzoni M, Güntekin B, Aktürk T, Hanoğlu L, Yener G, Emek-Savaş DD, Stocchi F, Vacca L, Frisoni GB, Del Percio C. Resting-state electroencephalographic delta rhythms may reflect global cortical arousal in healthy old seniors and patients with Alzheimer's disease dementia. International journal of psychophysiology : official journal of the International Organization of Psychophysiology. 2020 October; 158: 259-270. doi:10.1016/j.ijpsycho.2020.08.012.

Eskier D, Suner A, Oktay Y, Karakülah G. Mutations of SARS-CoV-2 nsp14 exhibit strong association with increased genome-wide mutation load. PeerJ. 2020 October; 8: e10181. doi:10.7717/peerj.10181.

Ozkan H, Tuzun F, Taheri S, Korhan P, Akokay P, Yılmaz O, Duman N, Özer E, Tufan E, Kumral A, Özkul Y. Epigenetic Programming Through Breast Milk and Its Impact on Milk-Siblings Mating. Frontiers in genetics. 2020 October; 11: 569232. doi:10.3389/fgene.2020.569232.

Targen S, Kaya T, Avci ME, Gunes D, Keskus AG, Konu O. ZenoFishDb v1.1: A Database for Xenotransplantation Studies in Zebrafish. Zebrafish. 2020 October; 17 (5): 305-318. doi:10.1089/zeb.2020.1869.

* Lou W, Stimple SD, Desai AA, Makowski EK, Kalyoncu S, Mogensen JE, Spang LT, Asgreen DJ, Staby A, Duus K, Amstrup J, Zhang Y, Tessier PM. Directed evolution of conformation-specific antibodies for sensitive detection of polypeptide aggregates in therapeutic drug formulations. Biotechnology and bioengineering. 2020 October; 118 (2): 797-808. doi:10.1002/bit.27610.

Chai C, Cox B, Yaish D, Gross D, Rosenberg N, Amblard F, Shemuelian Z, Gefen M, Korach A, Tirosh O, Lanton T, Link H, Tam J, Permikov A, Ozhan G, Citrin J, Liao H, Tannous M, Hahn M, Axelrod J, Arretxe E, Alonso C, Martinez-Arranz I, Betés PO, Safadi R, Salhab A, Amer J, Tber Z, Mengshetti S, Giladi H, Schinazi RF, Galun E. Agonist of RORA Attenuates Non-Alcoholic Fatty Liver Progression in Mice via Upregulation of microRNA 122. Gastroenterology. 2020 September; 159 (3): 999-1014.e9. doi:10.1053/j.gastro.2020.05.056.

Ece Cakiroglu, Serif Senturk. Genomics and Functional Genomics of Malignant Pleural Mesothelioma. International Journal of Molecular Sciences. 2020 September; 21 (17): E6342. doi:10.3390/ijms21176342.

Seda Nur Topkaya and Arif E. Cetin. Electrochemical Aptasensors for Biological and Chemical Analyte Detection. ELECTROANALYSIS. 2020 September. doi:10.1002/elan.202060388.

Çekok K, Kahraman T, Duran G, Dönmez Çolakoğlu B, Yener G, Yerlikaya D, Genç A. Timed Up and Go Test With a Cognitive Task: Correlations With Neuropsychological Measures in People With Parkinson's Disease. Cureus. 2020 September; 12 (9): e10604. doi:10.7759/cureus.10604.

Yilmaz F, Berk AT, Yilmaz O, Lebe BK, Keskinoglu P, Bagriyanik HA. Comparison of the local effects of different intracameral cefuroxime solutions on rabbit cornea. Cutaneous and ocular toxicology. 2020 September: 1-9. doi:10.1080/15569527.2020.1813748.

Olcum M, Tastan B, Ercan I, Eltutan IB, Genc S. Inhibitory effects of phytochemicals on NLRP3 inflammasome activation: A review. Phytomedicine : international journal of phytotherapy and phytopharmacology. 2020 August; 75: 153238. doi:10.1016/j.phymed.2020.153238.

Paketci C , Edem P , Hiz S , Sonmezler E , Soydemir D , Sarikaya Uzan G ,Oktay Y, O'Heir E , Beltran S, Laurie S, Töpf A, Lochmuller H, Horvath R, Yis U. Successful treatment of intractable epilepsy with ketogenic diet therapy in twins with ALG3-CDG. Brain and Development. 2020 August; 42 (7): 539-545. doi:10.1016/j.braindev.2020.04.008.

Küçük C, Wei L, You H. Indolent T-Cell Lymphoproliferative Disease of the GI Tract: Insights for Better Diagnosis, Prognosis, and Appropriate Therapy. Frontiers in oncology. 2020 August; 10: 1276. doi:10.3389/fonc.2020.01276.

Melikov R, Srivastava SB, Karatum O, Dogru-Yuksel IB, Bahmani Jalali H, Sadeghi S, Dikbas UM, Ulgut B, Kavakli IH, Cetin AE, Nizamoglu S. Plasmon-Coupled Photocapacitor Neuromodulators. ACS applied materials & interfaces. 2020 August; 12 (32): 35940-35949. doi:10.1021/acsami.0c09455.

Eskier D, Karakülah G, Suner A, Oktay Y. RdRp mutations are associated with SARS-CoV-2 genome evolution. PeerJ. 2020 July; 8: e9587. doi:10.7717/peerj.9587.

Mehmet Ergüven, Kasım Diril. Investigating the determinants of mammalian Mastl kinase activation. BioRxiv. 2020 July: 179580. doi:10.1101/2020.06.30.179580.

Topel H, Bagirsakci E, Comez D, Bagci G, Cakan-Akdogan G, Atabey N. lncRNA HOTAIR overexpression induced downregulation of c-Met signaling promotes hybrid epithelial/mesenchymal phenotype in hepatocellular carcinoma cells. Cell communication and signaling : CCS. 2020 July; 18 (1): 110. doi:10.1186/s12964-020-00602-0.

Kara E, Kahraman E, Dayar E, Yetik Anacak G, Demir O, Gidener S, Atabey N, Durmus N. The role of resistin on metabolic syndrome-induced erectile dysfunction and the possible therapeutic effect of Boldine. Andrology. 2020 July. doi:10.1111/andr.12853.

Tozburun S. Superficial photothermal laser ablation of ex vivo sheep esophagus using a cone-shaped optical fiber tip. Journal of biophotonics. 2020 June; 13 (6): e201960116. doi:10.1002/jbio.201960116.

Oktay Y, Güngör S, Zeltner L, Wiethoff S, Schöls L, Sonmezler E, Yilmaz E, Munro B, Bender B, Kernstock C, Kaemereit S, Liepelt I, Töpf A, Yis U, Laurie S, Yaramis A, Zuchner S, Hiz S, Lochmüller H, Schüle R, Horvath R. Confirmation of TACO1 as a Leigh Syndrome Disease Gene in Two Additional Families. Journal of neuromuscular diseases. 2020 June; 7 (3): 301-308. doi:10.3233/JND-200510.

Eskier D, Suner A, Karakülah G, Oktay Y. Mutation density changes in SARS-CoV-2 are related to the pandemic stage but to a lesser extent in the dominant strain with mutations in spike and RdRp. PeerJ. 2020 June; 8: e9703. doi:10.7717/peerj.9703.

Boopathi R, Danev R, Khoshouei M, Kale S, Nahata S, Ramos L, Angelov D, Dimitrov S, Hamiche A, Petosa C, Bednar J. Phase-plate cryo-EM structure of the Widom 601 CENP-A nucleosome core particle reveals differential flexibility of the DNA ends. Nucleic acids research. 2020 June; 48 (10): 5735-5748. doi:10.1093/nar/gkaa246.

Zehra Tavsan, Hulya Ayar Kayali. Protein Kinase C regulates the complex between cell membrane molecules in ovarian cancer. Process Biochemistr. 2020 May; 92: 182-189. doi:10.1016/j.procbio.2020.01.009.

Doğa Eskier, Gökhan Karakülah, Aslı Suner, Yavuz Oktay. RdRp mutations are associated with SARS-CoV-2 genome evolution. BioRxiv. 2020 May. doi:10.1101/2020.05.20.104885.

Karagonlar ZF, Akbari S, Karabicici M, Sahin E, Avci ST, Ersoy N, Ates KE, Balli T, Karacicek B, Kaplan KN, Celiker C, Atabey N, Erdal E. A Novel Function for KLF4 in Modulating the De-differentiation of EpCAM -/CD133 - nonStem Cells Into EpCAM +/CD133 + Liver Cancer Stem Cells in HCC Cell Line HuH7. Cells. 2020 May; 9 (5): 1198. doi:10.3390/cells9051198.

Seda Nur Topkaya, Ayca Karasakal, Arif E. Cetin, Sulunay Parlar, and Vildan Alptuzun. Electrochemical Characteristics of a Novel Pyridinium Salt as a Candidate Drug Molecule and Its Interaction with DNA. ELECTROANALYSIS. 2020 April; 32 (8): 1780-1787. doi:10.1002/elan.202000012.

Belotti E, Lacoste N, Simonet T, Papin C, Padmanabhan K, Scionti I, Gangloff YG, Ramos L, Dalkara D, Hamiche A, Dimitrov S, Schaeffer L. H2A.Z is dispensable for both basal and activated transcription in post-mitotic mouse muscles. Nucleic acids research. 2020 April. doi:10.1093/nar/gkaa157.

Dilucca M, Forcelloni S, Georgakilas AG, Giansanti A, Pavlopoulou A. Codon Usage and Phenotypic Divergences of SARS-CoV-2 Genes. Viruses. 2020 April; 12 (5). doi:10.3390/v12050498.

Özdemir S, Şengez B, Arslanoğlu A. Human immunodeficiency virus type-1 Tat protein induces secretory leukocyte protease inhibitor expression in African green monkey but not human cells. Virus genes. 2020 April; 56 (2): 182-193. doi:10.1007/s11262-020-01731-x.

Ana Töpf, Yavuz Oktay, Sunitha Balaraju, Elmasnur Yilmaz, Ece Sonmezler, Uluc Yis, Steven Laurie, Rachel Thompson, Andreas Roos, Daniel G MacArthur, .... Severe neurodevelopmental disease caused by a homozygous TLK2 variant. European journal of human genetics. 2020 March; 28 (3): 383-387. doi:10.1038/s41431-019-0519-x.

Serap Erkek. Mesane gen regülasyonunda etkili süper-enhancer’ların belirlenmesi. Türk Hijyen ve Deneysel Biyoloji Dergisi. 2020 March; 77 (1): 41-50. doi:10.5505/TurkHijyen.2019.81904.

Ceren Durmaz Engin, Serap Cilaker Micili, Osman Yilmaz, Husnu Alper Bagriyanik, Bekir Ugur Ergur, Fatos Onen, Ali Osman Saatci. Ocular toxicity of intravitreal Golimumab in a rabbit model. TURKISH JOURNAL OF MEDICAL SCIENCES. 2020 March; 50 (4): 1111-1122. doi:10.3906/sag-1911-11.

Tavsan, Z., Ayar Kayali H. EpCAM-claudin-tetraspanin-modulated ovarian cancer progression and drug resistance. Cell Adhesion & Migration. 2020 February; 14 (1): 57-68. doi:10.1080/19336918.2020.1732761.

Ceylan D, Tufekci KU, Keskinoglu P, Genc S, Özerdem A. Circulating exosomal microRNAs in bipolar disorder. Journal of affective disorders. 2020 February; 262: 99-107. doi:10.1016/j.jad.2019.10.038.

Küçük C. Genetic susceptibility to natural killer T-cell lymphoma. The Lancet. Oncology. 2020 February; 21 (2): 196-197. doi:10.1016/S1470-2045(19)30820-4.

Karaoğlan M, Erden-Karaoğlan F, Yılmaz S, İnan M. Identification of major ADH genes in ethanol metabolism of Pichia pastoris. Yeast. 2020 February; 37 (2): 227-236. doi:10.1002/yea.3443.

Arif E. Cetin, Cihan Yilmaz, Betty C. Galarreta, Gizem Yilmaz, Hatice Altug and Ahmed Busnaina. Fabrication of Sub-10 nm Plasmonic Gaps for Ultra-Sensitive Raman Spectroscopy. PLASMONICS. 2020 February. doi:10.1007/s11468-020-01137-3.

Esmeray E, Küçük C. Genetic alterations in B cell lymphoma subtypes as potential biomarkers for noninvasive diagnosis, prognosis, therapy, and disease monitoring. Turkish journal of biology = Turk biyoloji dergisi. 2020 February; 44 (1): 1-14. doi:10.3906/biy-1908-23.

Szmyd R, Niska-Blakie J, Diril MK, Nunes PR, Tzelepis K, Lacroix A, van Hul N, Deng LW, Matos J, Dreesen O, Bisteau X, Kaldis P. Correction: Premature activation of Cdk1 leads to mitotic events in S phase and embryonic lethality. Oncogene. 2020 February; 39 (9): 2030. doi:10.1038/s41388-019-1114-x.

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Küçük C, Wang J, Xiang Y, You H. Epigenetic aberrations in natural killer/T-cell lymphoma: diagnostic, prognostic and therapeutic implications. Therapeutic advances in medical oncology. 2020 February; 12: 1758835919900856. doi:10.1177/1758835919900856.

Subasi, E., Atalay, E. B., Erdogan, D., Sen, B., Pakyapan, B., Kayali, H. A.. Synthesis and characterization of thiosemicarbazone-functionalized organoruthenium (II)-arene complexes: Investigation of antitumor characteristics in colorectal cancer cell lines. Materials Science and Engineering: C. 2020 January; 106 (110152). doi:10.1016/j.msec.2019.110152.

Ahmet Yaramis, Hanns Lochmüller, Ana Töpf, Ece Sonmezler, Elmasnur Yilmaz, Semra Hiz, Uluc Yis, Serdal Gungor, Ayse Ipek Polat, Pinar Edem, Sergi Beltran, Steven Laurie, Aysenur Yaramis, Rita Horvath, Yavuz Oktay. COL4A1-related autosomal recessive encephalopathy in 2 Turkish children. Neurology Genetics. 2020 January; 6 (1): 1. doi:10.1212/NXG.0000000000000392.

Melike Tetik, Nese Direk, Betul Onder, Cansu Aykac, Burcu Ekinci, Tutku Yaras, Aykut Kuruoglu, Cagatay Ermis, Tunc Alkin, Yavuz Oktay. Blood Levels of NLRP3 Inflammasome Components is Associated with Obsessive Compulsive Disorder. Biological Psychiatry. 2020 January. doi:10.1101/2020.01.30.20019646.

Olcum M, Tastan B, Kiser C, Genc S, Genc K. Microglial NLRP3 inflammasome activation in multiple sclerosis. Advances in protein chemistry and structural biology. 2020 January; 119: 247-308. doi:10.1016/bs.apcsb.2019.08.007.

Pradas-Juni M, Hansmeier NR, Link JC, Schmidt E, Larsen BD, Klemm P, Meola N, Topel H, Loureiro R, Dhaouadi I, Kiefer CA, Schwarzer R, Khani S, Oliverio M, Awazawa M, Frommolt P, Heeren J, Scheja L, Heine M, Dieterich C, Büning H, Yang L, Cao H, Jesus DF, Kulkarni RN, Zevnik B, Tröder SE, Knippschild U, Edwards PA, Lee RG, Yamamoto M, Ulitsky I, Fernandez-Rebollo E, Vallim TQA, Kornfeld JW. A MAFG-lncRNA axis links systemic nutrient abundance to hepatic glucose metabolism. Nature communications. 2020 January; 11 (1): 644. doi:10.1038/s41467-020-14323-y.

Karadag M, Arslan M, Kaleli NE, Kalyoncu S. Physicochemical determinants of antibody-protein interactions. Advances in protein chemistry and structural biology. 2020 January; 121: 85-114. doi:10.1016/bs.apcsb.2019.08.011.

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Begüm Demirkurt, Gulcin Cakan-Akdogan, Yasar Akdogan. Preparation of albumin nanoparticles in water-in-ionic liquid microemulsions. Journal of Molecular Liquids. 2019 December; 295: 117713. doi:10.1016/j.molliq.2019.111713.

Soheil Akbari, Nur Arslan, Şerif Şentürk, Esra Erdal. Next-Generation Liver Medicine Using Organoid Models. Frontiers in Cell and Developmental Biology-Stem Cell Research. 2019 December; 7: 345. doi:10.3389/fcell.2019.00345.

Karakülah G, Arslan N, Yandım C, Suner A. TEffectR: an R package for studying the potential effects of transposable elements on gene expression with linear regression model. PeerJ. 2019 December; 7: e8192. doi:10.7717/peerj.8192.

Yandım C, Karakülah G. Dysregulated expression of repetitive DNA in ER+/HER2- breast cancer. Cancer Genetics. 2019 November; 239: 36-45. doi:10.1016/j.cancergen.2019.09.002.

Azbazdar Y, Ozalp O, Sezgin E, Veerapathiran S, Duncan AL, Sansom MSP, Eggeling C, Wohland T, Karaca E, Ozhan G. More Favorable Palmitic Acid Over Palmitoleic Acid Modification of Wnt3 Ensures Its Localization and Activity in Plasma Membrane Domains. Frontiers in cell and developmental biology. 2019 November; 7: 281. doi:10.3389/fcell.2019.00281.

Arif E. Cetin, and Seda Nur Topkaya. Plasmonic Diffraction Field Pattern Imaging Could Resolve Ultra-Sensitive Bio-Information. ACS PHOTONICS. 2019 November; 6 (11): 2626-2635. doi:10.1021/acsphotonics.9b01076.

Düzgün MB, Theofilatos K, Georgakilas AG, Pavlopoulou A. A Bioinformatic Approach for the Identification of Molecular Determinants of Resistance/Sensitivity to Cancer Thermotherapy. Oxidative medicine and cellular longevity. 2019 November; 2019: 4606219. doi:10.1155/2019/4606219.

Delman M, Avcı ST, Akçok İ, Kanbur T, Erdal E, Çağır A. Antiproliferative activity of (R)-4'-methylklavuzon on hepatocellular carcinoma cells and EpCAM+/CD133+ cancer stem cells via SIRT1 and Exportin-1 (CRM1) inhibition. European Journal of Medicinal Chemistry. 2019 October; 180: 224-237. doi:10.1016/j.ejmech.2019.07.024.

Shukla, MS; Syed, SH; Boopathi, R; Ben Simon, E; Nahata, S; Ramos, L; Dalkara, D; Moskalenko, C; Travers, A; Angelov, D; Dimitrov, S; Hamiche, A; Bednar, J. Generation of Remosomes by the SWI/SNF Chromatin Remodeler Family. Scientific Reports. 2019 October; 9. doi:10.1038/s41598-019-50572-8.

Soheil Akbari, Gulben Gurhan Sevinc, Nevin Ersoy, Onur Başak, Kübra Kaplan, Kenan Sevinç, Erkin Özel, Berke Sengun, Eray Enustun, Burcu Özçimen,......... Robust, long-term culture of endoderm derived hepatic organoids (eHEPOs) for disease modeling. Stem Cell Reports. 2019 September. doi:10.1016/j.stemcr.2019.08.007.

Sag D, Ayyildiz ZO, Gunalp S, Wingender G. The Role of TRAIL/DRs in the Modulation of Immune Cells and Responses. Cancers. 2019 September; 11 (10): 1469. doi:10.3390/cancers11101469.

Onur Bulut, Anıl Tanburoğlu, Gülşah Bölük, Nurhak Demir, Erden Eren, Ufuk Vurgun, Şermin Genç, Görsev Yener. Examination of IL-1β level as an inflammasome marker in Alzheimer's disease. Neurological Sciences and Neurophysiology. 2019 September; 36 (3): 141-147. doi:10.5152/NSN.2019.10324.

Shome S, Parra RG, Fatima N, Monzon AM, Cuypers B, Moosa Y, Coimbra NDR, Assis J, Giner-Delgado C, Dönertaş HM, Cuesta-Astroz Y, Saarunya G, Allali I, Gupta S, Srivastava A, Kalsan M, Valdivia C, J Olguin-Orellana G, Papadimitriou S, Parisi D, Kristensen NP, Rib L, Guebila MB, Bauer E, Zaffaroni G, Bekkar A, Ashano E, Paladin L, Necci M, Moreyra NN, Rydén M, Villalobos-Solís J, Papadopoulos N, Rafael C, Karakulak T, Kaya Y, Gladbach Y, Dhanda SK, Šoštarić N, Alex A, DeBlasio D, Rahman F. Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers. F1000Research. 2019 September; 8. doi:10.12688/f1000research.20408.1.

Tavsan, Z., Ayar Kayali H. Flavonoids showed anticancer effects on the ovarian cancer cells: Involvement of reactive oxygen species, apoptosis, cell cycle and invasion. Biomedicine & Pharmacotherapy. 2019 August; 116: 109004. doi:10.1016/j.biopha.2019.109004.

Seda Nur Topkaya and Arif E. Cetin. Investigation of Metal Ion Effect on Specific DNA Sequences and DNA Hybridization. Electroanalysis. 2019 August; 31: 1-8. doi:10.1002/elan.201900391.

Sengez B, Aygün I, Shehwana H, Toyran N, Tercan Avci S, Konu O, Stemmler MP, Alotaibi H. The Transcription Factor Elf3 Is Essential for a Successful Mesenchymal to Epithelial Transition. Cells. 2019 August; 8 (8). doi:10.3390/cells8080858.

Seda Nur Topkaya, and Arif E. Cetin. Determination of Electrochemical Interaction Between 2‐(1H‐benzimidazol‐2‐yl) Phenol and DNA Sequences. ELECTROANALYSIS. 2019 August; 31 (8): 1554-1561. doi:10.1002/elan.201900199.

Habibe Durmaz, Arif E Cetin, Yuyu Li, and Roberto Paiella. A Polarization Insensitive Wide-Band Perfect Absorber. ADVANCED ENGINEERING MATERIALS. 2019 August; 21 (8): 1900188. doi:10.1002/adem.201900188.

Dafsari HS, Sprute R, Wunderlich G, Daimagüler HS, Karaca E, Contreras A, Becker K, Schulze-Rhonhof M, Kiening K, Karakulak T, Kloss M, Horn A, Pauls A, Nürnberg P, Altmüller J, Thiele H, Assmann B, Koy A, Cirak S. Novel mutations in KMT2B offer pathophysiological insights into childhood-onset progressive dystonia. Journal of human genetics. 2019 August; 64 (8): 803-813. doi:10.1038/s10038-019-0625-1.

Nazlı Eda Kaleli, Murat Karadag, Sibel Kalyoncu. Phage display derived therapeutic antibodies have enriched aliphatic content: Insights for developability issues. Proteins: Structure, Function, and Bioinformatics. 2019 July; 87 (7): 607-618. doi:10.1002/prot.25685.

Kisa, Pelin Teke; Kose, Melis; Unal, Ozlem; Er, Esra; Hismi, Burcu Ozturk; Bulbul, Fatma Selda; Kose, Engin; Gunduz, Mehmet; Canda, Ebru; Kucukcongar, Aynur; Arslan, Nur. Clinical and molecular characteristics and time of diagnosis of patients with classical galactosemia in an unscreened population in Turkey. JOURNAL OF PEDIATRIC ENDOCRINOLOGY & METABOLISM. 2019 July; 32 (7): 675-681. doi:10.1515/jpem-2018-0457.

Pavlopoulou A, Karaca E, Balestrazzi A, Georgakilas AG. In Silico Phylogenetic and Structural Analyses of Plant Endogenous Danger Signaling Molecules upon Stress. Oxidative medicine and cellular longevity. 2019 July; 2019: 8683054. doi:10.1155/2019/8683054.

Türkdoğan D, Matthews E, Usluer S, Gündoğdu A, Uluç K, Mannikko R, Hanna MG, Sisodiya SM, Çağlayan HS. Possible role of SCN4A skeletal muscle mutation in apnea during seizure. Epilepsia open. 2019 July; 4 (3): 498-503. doi:10.1002/epi4.12347.

Karacicek B, Erac Y, Tosun M. Functional consequences of enhanced expression of STIM1 and Orai1 in Huh-7 hepatocellular carcinoma tumor-initiating cells. BMC cancer. 2019 July; 19 (1): 751. doi:10.1186/s12885-019-5947-z.

Arioz BI, Tastan B, Tarakcioglu E, Tufekci KU, Olcum M, Ersoy N, Bagriyanik A, Genc K, Genc S. Melatonin Attenuates LPS-Induced Acute Depressive-Like Behaviors and Microglial NLRP3 Inflammasome Activation Through the SIRT1/Nrf2 Pathway. Frontiers in immunology. 2019 July; 10: 1511. doi:10.3389/fimmu.2019.01511.

Yiş U., Hız S., Güneş S., Diniz G., Sönmezler E., Yılmaz E., Oktay Y. . Dihydropyridine receptor congenital myopathy in a consanguineous Turkish family. Journal of Neuromuscular Diseases. 2019 June; 6 (3): 377-384. doi:10.3233/JND-190383.

Arif E. Cetin, and Seda Nur Topkaya. Photonic Crystal and Plasmonic Nanohole Based Label-Free Biodetection. Biosensors & Bioelectronics. 2019 May; 132: 196-202. doi:10.1016/j.bios.2019.02.047.

Sen, Betul; Kalhan, Hatice Kubra; Demir, Volkan; Guler, Egemen Erdem; Kayali, Hulya Ayar; Subasi, Elif. Crystal structures, spectroscopic properties of new cobalt(II), nickel(II), zinc (II) and palladium(II) complexes derived from 2-acetyl-5-chloro thiophene thiosemicarbazone: Anticancer evaluation. MATERIALS SCIENCE & ENGINEERING C-MATERIALS FOR BIOLOGICAL APPLICATIONS. 2019 May; 98: 550-559. doi:10.1016/j.msec.2018.12.080.

Yandim, Cihangir; Karakulah, Gokhan. Expression dynamics of repetitive DNA in early human embryonic development. BMC GENOMICS. 2019 May; 20. doi:10.1186/s12864-019-5803-1.

Schulz H, Ruppert AK, Zara F, Madia F, Iacomino M, S Vari M, Balagura G, Minetti C, Striano P, Bianchi A, Marini C, Guerrini R, Weber YG, Becker F, Lerche H, Kapser C, Schankin CJ, Kunz WS, Møller RS, Oliver KL, Bellows ST, Mullen SA, Berkovic SF, Scheffer IE, Caglayan H, Ozbek U, Hoffmann P, Schramm S, Tsortouktzidis D, Becker AJ, Sander T. No evidence for a BRD2 promoter hypermethylation in blood leukocytes of Europeans with juvenile myoclonic epilepsy. Epilepsia. 2019 May; 60 (5): e31-e36. doi:10.1111/epi.14657.

Ege Ulgen, Ozge Can, Kaya Bilguvar, Yavuz Oktay, Cemaliye Akyerli, Ayça Danyeli, Cengiz Yakicier, Ugur Sezerman, Necmettin Pamir Koray Özduman. Whole Exome Sequencing-Based Analysis Identifies DNA Damage Repair Deficiency as a Major Contributor to Gliomagenesis in Adult Diffuse Gliomas. J Neurosurg. 2019 April: 1-12. doi:10.3171/2019.1.JNS182938.

Senem Demir, Cigdem Özen, Meltem Ceylan‐Ünlüsoy, Mehmet Öztürk, Oya Bozdağ‐Dündar. Novel Furochromone Derivatives: Synthesis and Anticancer Activity Studies. Journal of Heterocyclic Chemistry. 2019 April; 56 (4): 1341-1351. doi:10.1002/jhet.3508.

* Stimple SD, Kalyoncu S, Desai AA, Mogensen JE, Spang LT, Asgreen DJ, Staby A, Tessier PM. Sensitive detection of glucagon aggregation using amyloid fibril‐specific antibodies. Biotechnology and Bioengineering. 2019 April. doi:10.1002/bit.26994.

Arif E. Cetin. Effect of Left handed Materials in Surface Plasmon Excitation and Propagation Length. Turkish Journal of Physics. 2019 February; 43: 26-36. doi:10.3906/fiz-1804-9.

Dimitriou NM; Pavlopoulou A; Tremi I; Koukoulias V; Georgakilas AG. Prediction of Gold Nanoparticle and Microwave-Induced Hyperthermia Effects on Tumor Control via a Simulation Approach. Nanomaterials. 2019 February; 9 (2): E167. doi:10.3390/nano9020167.

Szmyd R, Niska-Blakie J, Diril MK, Renck Nunes P, Tzelepis K, Lacroix A, van Hul N, Deng LW, Matos J, Dreesen O, Bisteau X, Kaldis P.. Premature activation of Cdk1 leads to mitotic events in S phase and embryonic lethality. Oncogene. 2019 February; 38 (7): 998-1018. doi:10.1038/s41388-018-0464-0.

Kose E, Arslan N.. Vitamin/mineral and micronutrient status in patients with classical phenylketonuria. Clinical Nutrition. 2019 February; 38 (1): 197-203. doi:10.1016/j.clnu.2018.01.034.

Sharma AB, Dimitrov S, Hamiche A, Van Dyck E.. Centromeric and ectopic assembly of CENP-A chromatin in health and cancer: old marks and new tracks. Nucleic Acids Res. 2019 February; 47 (3): 1051–1069. doi:10.1093/nar/gky1298.

Merve Arslan, Dilara Karadag, Sibel Kalyoncu. Protein engineering approaches for antibody fragments: directed evolution and rational design approaches. Turkish Journal of Biology. 2019 February; 43 (1): 1-12. doi:10.3906/biy-1809-28.

Guzel, Orkide; Uysal, Utku; Arslan, Nur. Efficacy and tolerability of olive oil-based ketogenic diet in children with drug -resistant epilepsy: A single center experience from Turkey. EUROPEAN JOURNAL OF PAEDIATRIC NEUROLOGY. 2019 January; 23 (1): 143-151. doi:10.1016/j.ejpn.2018.11.007.

Okonechnikov K, Erkek S, Korbel JO, Pfister SM, Chavez L. InTAD: chromosome conformation guided analysis of enhancer target genes. BMC bioinformatics. 2019 January; 20 (1): 60. doi:10.1186/s12859-019-2655-2.

Erkek S, Johann PD, Finetti MA, Drosos Y, Chou HC, Zapatka M, Sturm D, Jones DTW, Korshunov A, Rhyzova M, Wolf S, Mallm JP, Beck K, Witt O, Kulozik AE, Frühwald MC, Northcott PA, Korbel JO, Lichter P, Eils R, Gajjar A, Roberts CWM, Williamson D, Hasselblatt M, Chavez L, Pfister SM, Kool M. Comprehensive Analysis of Chromatin States in Atypical Teratoid/Rhabdoid Tumor Identifies Diverging Roles for SWI/SNF and Polycomb in Gene Regulation. Cancer cell. 2019 January; 35 (1): 95-110.e8. doi:10.1016/j.ccell.2018.11.014.

Suner A, Carr BI, Akkiz H, Karakülah G, Üsküdar O, Yalçın K, Kuran S, Tokat Y, Yilmaz S, Özakyol A, Tokmak S, Ballı T, Yücesoy M, Bahçeci Hİ.... C-Reactive Protein and Platelet-Lymphocyte Ratio as Potential Tumor Markers in Low-Alpha-Fetoprotein Hepatocellular Carcinoma. Oncology. 2019 ; 96 (1): 25-32. doi:10.1159/000492473.

Kursun, Deniz; Kucuk, Can. Systematic analysis of the frequently amplified 2p15-p16.1 locus reveals PAPOLG as a potential proto-oncogene in follicular and transformed follicular lymphoma. TURKISH JOURNAL OF BIOLOGY. 2019 ; 43 (2). doi:10.3906/biy-1810-2.

IBG Affiliated : 50 ; * Current Adress IBG :2

Habibe Durmaz, Yuyu Li, and Arif E. Cetin. A Multiple-Band Perfect Absorber for SEIRA Applications. Sensors and Actuators B: Chemical. 2018 December; 275: 174-179. doi:10.1016/j.snb.2018.08.053.

Ahmet F. Coskun, Seda Nur Topkaya, Ali K. Yetisen, and Arif E. Cetin. Portable Multiplex Optical Assays. Advanced Optical Materials. 2018 December; 7 (4): 1801109. doi:10.1002/adom.201801109.

Kursunluoglu G, Taskiran D, Kayali HA.. The Investigation of the Antitumor Agent Toxicity and Capsaicin Effect on the Electron Transport Chain Enzymes, Catalase Activities and Lipid Peroxidation Levels in Lung, Heart and Brain Tissues of Rats. Molecules. 2018 December; 23 (12): 3267. doi:10.3390/molecules23123267.

Engur D. Regarding platelets and ductus: Is it platelet function rather than number that matters for ductal closure?. Pediatrics and neonatology. 2018 December; 59 (6): 640-641. doi:10.1016/j.pedneo.2018.08.006.

Utine CA, Durmaz Engin C, Ayhan Z. Effects of Preoperative Topometric Indices on Visual Gain After Intracorneal Ring Segment Implantation For Keratoconus. Eye & Contact Lens Science and Clinical Practice. 2018 November; 44 (2): S387-S391. doi:10.1097/ICL.0000000000000490.

Karahalil E, Coban HB, Turhan I.. A current approach to the control of filamentous fungal growth in media: microparticle enhanced cultivation technique. Crit Rev Biotechnol. 2018 November: 192-201. doi:10.1080/07388551.2018.1531821.

Demirel, Fadime; Germec, Mustafa; Coban, Hasan Bugra; Turhan, Irfan. Optimization of dilute acid pretreatment of barley husk and oat husk and determination of their chemical composition. CELLULOSE. 2018 November; 25 (11): 6377-6393. doi:10.1007/s10570-018-2022-x.

Carr, Brian, I; Giannelli, Gianluigi; Guerra, Vito; Giannini, Edoardo G.; Farinati, Fabio; Rapaccini, Gian Ludovico; Di Marco, Maria; Zoli, Marco; Caturelli, Eugenio; Masotto, Alberto; Virdone, Roberto; Sacco, Rodolfo; Trevisani, Franco. Plasma cholesterol and lipoprotein levels in relation to tumor aggressiveness and survival in HCC patients. INTERNATIONAL JOURNAL OF BIOLOGICAL MARKERS. 2018 November; 33 (4): 423-431. doi:10.1177/1724600818776838.

Cubukcu D, Guzel O, Arslan N. Effect of ketogenic diet on motor functions and daily living activities of children with multidrug-resistant epilepsy: A prospective study. Journal of Child Neurolgy. 2018 October; 33 (11): 718-723. doi:10.1177/0883073818786558.

Muzaffer Dükel, Zehra Tavsan, Duygu Erdogan, Deniz Erkan Gök . Protein Kinase C Inhibitors Selectively Modulate Dynamics of Cell Adhesion Molecules and Cell Death in Human Colon Cancer Cells. CELL ADHESION & MIGRATION . 2018 October; 13 (1): 83-97. doi:10.1080/19336918.2018.1530933.

Hapil FZ, Wingender G. The interaction between invariant Natural Killer T cells and the mucosal microbiota. Immunology. 2018 October; 155 (2): 164-175. doi:10.1111/imm.12958.

Zhang B, Unver T.. A critical and speculative review on microRNA technology in crop improvement: Current challenges and future directions. Plant Science. 2018 September; 274: 193-200. doi:10.1016/j.plantsci.2018.05.031.

Kontou PI; Pavlopoulou A; Braliou G; Bogiatzi S; Dimou NL; Bangalore S; Bagos P. Identification of Gene Expression Profiles in Myocardial Infarction: a Systematic Review and Meta-analysis. BMC Medical Genomics. 2018 September; 11: 109. doi:10.1186/s12920-018-0427-x.

Utine CA, Stern M, Akpek EK. Immunopathological Features of Severe Chronic Atopic Keratoconjunctivitis and Effects of Topical Cyclosporine Treatment. Ocular immunology and inflammation. 2018 September; 6: 1-10. doi:10.1080/09273948.2018.1511811.

Karakülah G.. RTFAdb: A database of computationally predicted associations between retrotransposons and transcription factors in the human and mouse genomes. Genomics. 2018 September; 110 (5): 257-262. doi:10.1016/j.ygeno.2017.11.002.

Utine CA, Ayhan Z, Durmaz Engin C. Effect of intracorneal ring segment implantation on corneal asphericity. Int J Ophthalmol. 2018 August; 11 (8): 1303-1307. doi:10.18240/ijo.2018.08.09.

Genc B, Bozan HR, Genc S, Genc K.. Stem Cell Therapy for Multiple Sclerosis. Adv Exp Med Biol. 2018 July: 145-175. doi:10.1007/5584_2018_247.

Athanasia Pavlopoulou, Ezgi Karaca, Alma Balestrazzi, Alexandros G. Georgakilas. InSilicoPhylogenetic andStructural Analysis ofPlant Damps. Preprints. 2018 July; 2018070522: 1-14. doi:10.20944/preprints201807.0522.v1.

Aynur Sahin, Mualla Aylin Arici, Yeliz Yilmaz, Sule Kalkan, Nergiz Durmus, Bekir Ugur Ergur, Ilkay Yakut Aksu, Neşe Atabey, Yesim Tuncok. A Comparison of the Effectiveness of Silibinin and Resveratrol in Preventing Alpha-Amanitin-Induced Hepatotoxicity. Basic Clinical Pharmacology & Toxicology. 2018 June; 122 (6): 633-642. doi:10.1111/bcpt.12954.

Bonvin AMJJ, Karaca E, Kastritis PL, Rodrigues JPGLM. Defining distance restraints in HADDOCK. Nature Protocols. 2018 June; 13: 1503. doi:10.1038/s41596-018-0017-6.

Karakülah G, Pavlopoulou A. In silico Phylogenetic Analysis of hAT Transposable Elements in Plants. Genes. 2018 June; 9 (6): 284. doi:10.3390/genes9060284.

Hikmet Akkiz, Brian I. Carr, Sedef Kuran, et al.. Macroscopic Portal Vein Thrombosis in HCC Patients. Canadian Journal of Gastroenterology and Hepatology. 2018 June. doi:10.1155/2018/3120185.

Rosalba D’Alessandro, Maria Grazia Refolo, Catia Lippolis, et al.. Strong enhancement by IGF1-R antagonists of hepatocellular carcinoma cell migration inhibition by Sorafenib and/or vitamin K1. Cellular Oncology. 2018 June; 41: 283-296. doi:10.1007/s13402-018-0370-z.

Chandra S, Wingender G, Greenbaum JA, Kronenberg M. Response to Comment on "Development of Asthma in Inner-City Children: Possible Roles of MAIT Cells and Variation in the Home Environment". Journal of immunology (Baltimore, Md. : 1950). 2018 May; 200 (10): 3317-3318. doi:10.4049/jimmunol.1800397.

Zehra Tavsan, Pelin Köse Yaman, Elif Subasi, Hülya Ayar Kayalı. Screening organometallic thiophene containing thiosemicarbazone ruthenium (II/III) complexes as potential anti-tumour agents. J Biol Inorg Chem. 2018 May; 23 (3): 425-435. doi:10.1007/s00775-018-1549-5.

Wang D, Özen C, Abu-Reidah IM, Chigurupati S, Patra JK, Horbanczuk JO, Jóźwik A, Tzvetkov NT, Uhrin P, Atanasov AG. Vasculoprotective Effects of Pomegranate (Punica granatum L.). Frontiers in Pharmacology. 2018 May; 9: 544. doi:10.3389/fphar.2018.00544.

Yossi Ventura, Brian I Carr, Issac Kori, Vito Guerra, and Oren Shibolet. Analysis of aggressiveness factors in hepatocellular carcinoma patients undergoing transarterial chemoembolization. World J Gastroenterol. 2018 April; 24 (15): 1641-1649. doi:10.3748/wjg.v24.i15.1641.

Pavlopoulos GA; Kontou PI; Bouyioukos C; Markou E; Bagos PG. Bipartite graphs in systems biology and medicine: a survey of methods and applications. GigaScience. 2018 April; 7 (4): 1-31. doi:10.1093/gigascience/giy014.

Nikolaou M, Pavlopoulou A, Georgakilas AG, Kyrodimos E. The challenge of drug resistance in cancer treatment: a current overview. Clin Exp Metastasis. 2018 April; 35 (4): 309-318. doi:10.1007/s10585-018-9903-0.

* Akyerli CB, Yüksel Ş, Can Ş, Erson-Omay EZ, Oktay Y, Coşgun E, Ülgen E, Erdemgil Y, Sav A, von Deimling A, Günel M, Yakıcıer MC, Pamir MN, Öz............ Use of telomerase promoter mutations to mark specific molecular subsets with reciprocal clinical behavior in IDH mutant and IDH wild-type diffuse gliomas. J Neurosurg. 2018 April; 128 (4): 1102-1114. doi:10.3171/2016.11.JNS16973.

Chandra S, Wingender G, Greenbaum JA, Khurana A, Gholami AM, Ganesan AP, Rosenbach M, Jaffee K, Gern JE, Wood R, O'Connor G, Sandel M, Kattan M, Bacharier L, Togias A, Horner AA, Kronenberg M. Development of asthma in inner-city children: Possible roles of MAIT cells and variation in the home environment. Journal of immunology (Baltimore, Md. : 1950). 2018 March; 200 (6): 1995-2003. doi:10.4049/jimmunol.1701525.

Tufekci KU, Vurgun U, Yigitaslan O, Keskinoglu P, Yaka E, Kutluk K, Genc S. Follow-up Analysis of Serum TNF-Related Apoptosis-Inducing Ligand Protein and mRNA Expression in Peripheral Blood Mononuclear Cells from Patients with Ischemic Stroke. Front Neurol. 2018 March; 9: 102. doi:10.3389/fneur.2018.00102.

Nikitaki Z; Holá M, Doná M; Pavlopoulou A; Michalopoulos I; Angelis KJ; Georgakilas AG; Macovei A; Balestrazzi A . Integrating plant and animal biology for the search of novel DNA damage biomarkers. Mutat Res. 2018 March; 775: 21-38. doi:10.1016/j.mrrev.2018.01.001.

Tozburun S, Blatter C, Siddiqui M, Meijer EFJ, Vakoc BJ. Phase-stable Doppler OCT at 19 MHz using a stretched-pulse mode-locked laser. Biomedical Optics Express. 2018 March; 9 (3): 952-961. doi:10.1364/BOE.9.000952.

Küçükgüçlü Ö, Akpınar Söylemez B, Yener G, Işık AT. The effects of support groups on dementia caregivers: A mixed method study. Geriatr Nurs. 2018 March; 39 (2): 151-156. doi:10.1016/j.gerinurse.2017.07.008.

Rubio-Cosials A, Schulz EC, Lambertsen L, Smyshlyaev G, Rojas-Cordova C, Forslund K, Karaca E, Bebel A, Bork P, Barabas O. Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance. Cell. 2018 March; 173 (1): 208-220.e220. doi:10.1016/j.cell.2018.02.032.

Demirci, Yeliz; Zhang, Baohong; Unver, Turgay. CRISPR/Cas9: An RNA-guided highly precise synthetic tool for plant genome editing. JOURNAL OF CELLULAR PHYSIOLOGY. 2018 March; 233 (3): 1844-1859. doi:10.1002/jcp.25970.

* Naing SH, Kalyoncu S, Smalley DM, Kim H, Tao X, George JB, Jonke AP, Oliver RC, Urban VS, Torres MP, Lieberman RL. Both positional and chemical variables control in vitro proteolytic cleavage of a presenilin ortholog. Journal of Biological Chemistry. 2018 March; 293 (13): 4653-4663. doi:10.1074/jbc.RA117.001436.

Akkiz H, Carr BI, Yalçın K K, Guerra V, Kuran S, Altıntaş E, Üsküdar O, Karaoğullarından Ü, Özakyol A, Tokmak S, Yücesoy M, Bahçeci Hİ, Ülkü A, Akçam T, Yalçın Polat K, Ekinci N, Şimşek H, Örmeci N, Sonsuz A, Demir M, Kılıç M, Uygun A, Ballı T, Demir A, Arslan B, Doran F.. Characteristics of hepatocellular carcinoma aggressiveness factors in Turkish patients. Oncology. 2018 February; 94 (2): 116-124. doi:10.1159/000484564.

Güntekin B, Hanoğlu L, Güner D, Yılmaz NH, Çadırcı F, Mantar N, Aktürk T, Emek-Savaş DD, Özer FF, Yener G, Başar E. Cognitive Impairment in Parkinson’s Disease Is Reflected with Gradual Decrease of EEG Delta Responses during Auditory Discrimination. Frontiers in Psychology. 2018 February; 9: 170. doi:10.3389/fpsyg.2018.00170.

Büyüköz M, Erdal E, Alsoy Altinkaya S. Nanofibrous gelatine scaffolds integrated with nerve growth factor-loaded alginate microspheres for brain tissue engineering. J Tissue Eng Regen Med. 2018 February; 12 (2): e707-e719. doi:10.1002/term.2353.

Ercan I, Tufekci KU, Karaca E, Genc S, Genc K. Peptide Derivatives of Erythropoietin in the Treatment of Neuroinflammation and Neurodegeneration. Advances in Protein Chemistry and Structural Biology. 2018 February; 112: 309-357. doi:10.1016/bs.apcsb.2018.01.007.

Ozen C, Ceylan-Unlusoy M, Ozturk M, Bozdag-Dundar O.. A novel chromonyl thiohydantoin with anti-proliferative action on primary hepatocellular carcinoma cells. Med Chem Res. 2018 January; 27 (1): 153-160. doi:10.1007/s00044-017-2037-0.

Kose E, Guzel O, Arslan. Analysis of hematological parameters in patients treated with ketogenic diet due to drug-resistant epilepsy. Neurol Sci. 2018 January; 39 (1): 85-89. doi:10.1007/s10072-017-3152-x.

Avci ME, Keskus AG, Targen S, Isilak ME, Ozturk M, Atalay RC, Adams MM, Konu O. Development of a novel zebrafish xenograft model in ache mutants using liver cancer cell lines. Scientific Reports. 2018 January; 8 (1): 1570. doi:10.1038/s41598-018-19817-w.

Eren E, Tufekci KU, Isci KB, Tastan B, Genc K, Genc S.. Sulforaphane Inhibits Lipopolysaccharide-Induced Inflammation, Cytotoxicity, Oxidative Stress, and miR-155 Expression and Switches to Mox Phenotype through Activating Extracellular Signal-Regulated Kinase 1/2-Nuclear Factor Erythroid 2-Related Factor 2/Antioxidant Response Element Pathway in Murine Microglial Cells. Front Immunol. 2018 January; 9: 36. doi:10.3389/fimmu.2018.00036.

Korhan P, Yılmaz Y, Bağırsakçı E, Güneş A, Topel H, Carr BI, Atabey N. Pleiotropic Effects of Heparins: From Clinical Applications to Molecular Mechanisms in Hepatocellular Carcinoma. Canadian Journal of Gastroenterology and Hepatology. 2018 January; 2018: 7568742. doi:10.1155/2018/7568742.

Brian I. Carr, Hikmet Akkiz, Vito Guerra, Oguz Üsküdar, Sedef Kuran, Ümit Karaoğullarından, Salih Tokmak, Tuğsan Ballı, Abdulalh Ülkü, Tolga Akçam, Anıl Delik, Burcu Arslan, Figen Doran, Kendal Yalçın, Engin Altıntaş, Ayşegül Özakyol, Mehmet Yücesoy, Halil İbrahim Bahçeci, Kamil Yalçın Polat, Nazım Ekinci, Halis Şimşek, Necati Örmeci, Abdulalh Sonsuz, Mehmet Demir, Murat Kılıç, Ahmet Uygun, Ali Demir, Sezai Yilmaz & Yaman Tokat. C-reactive protein and hepatocellular carcinoma: analysis of its relationships to tumor factors. Clinical Practice (Therapy). 2018 ; 15 (SI): 625-634. doi:10.4172/clinical-practice.1000409.

Brian I. Carr, Hikmet Akkiz, Oguz Üsküdar, Kendal Yalçın, Vito Guerra, Sedef Kuran, Ümit Karaoğullarından, Engin Altıntaş, Ayşegül Özakyol, Salih Tokmak, Tuğsan Ballı, Mehmet Yücesoy, Halil İbrahim Bahçeci, Abdulalh Ülkü, Tolga Akçam, Kamil Yalçın Polat, Nazım Ekinci, Halis Şimşek, Necati Örmeci, Abdulalh Sonsuz, Mehmet Demir, Murat Kılıç, Ahmet Uygun, Ali Demir, Anıl Delik, Burcu Arslan, Figen Doran, Sezai Yilmaz & Yaman Tokat. HCC with low- and normal serum alpha-fetoprotein levels. Clinical Practice (Therapy). 2018 ; 15 (1): 453-464. doi:10.4172/clinical-practice.1000393.

Zehra Tavsan, Hülya Ayar Kayalı. Phenylpropanoid Pathway Response to Cadmium and Lead Stress in Phaselous vulgaris Roots and Leaves. Asian Journal of Biotechnology and Bioresource Technology. 2018 ; 3 (4): 2457-0125. doi:10.9734/AJB2T/2018/40759.

Aysim Gunes, Ezgi Bagirsakci, Evin Iscan, Gulcin Cakan-Akdogan, Umut Aykutlu, Serif Senturk, Gunes Ozhan, Esra Erdal, Deniz Nart, Funda Yilmaz Barbet, Nese Atabey. Thioredoxin interacting protein promotes invasion in hepatocellular carcinoma. Oncotarget. 2018 ; 9 (96): 36849-36866. doi:10.18632/oncotarget.26402.

Hande Server Çağlayan. Lafora Disease: Molecular Etiology. Epilepsi. 2018 ; 24 (1): 1-7. doi:10.14744/epilepsi.2017.48278 .

IBG Affiliated : 45 ; * Current Adress IBG :2

Mitesh Dwivedi, Ansarullah, Ilian Radichev and E. Helen Kemp. Alteration of Immune-Mechanisms by Human Microbiota and Development and Prevention of Human Diseases. Journal of Immunology Research. 2017 December; 2017. doi:10.1155/2017/6985256.

Jasmin Lalonde, Surya A. Reis, Sudhir Sivakumaran, Carl S. Holland, Hendrik Wesseling, John F. Sauld, Begum Alural, Wen-Ning Zhao, Judith A. Steen & Stephen J. Haggarty . Chemogenomic analysis reveals key role for lysine acetylation in regulating Arc stability. Nat Commun. 2017 November; 8: 1659. doi:10.1038/s41467-017-01750-7.

Duygu Sag, Müge Özkan, Mitchell Kronenberg & Gerhard Wingender. Improved Detection of Cytokines Produced by Invariant NKT Cells. Sci Rep. 2017 November; 7 (1): 16607. doi:10.1038/s41598-017-16832-1.

Wan Y, He D, Ye Y, Zhang W, Zhao S, Long Y, Chen M, Küçük C. Primary cardiac diffuse large B-cell lymphoma with concurrent high MYC and BCL2 expression in an immunocompetent Chinese elderly woman. Cardiovasc Pathol. 2017 November; 31: 54-56. doi:10.1016/j.carpath.2017.07.006.

Cigdem Ozen, Meltem Ceylan Unlusoy, Nazanin Aliary, Mehmet Ozturk, Oya Bozdag Dundar.. Thiazolidinedione or Rhodanine: A Study on Synthesis and Anticancer Activity Comparison of Novel Thiazole Derivatives. J Pharm Sci. 2017 November; 20 (1): 415-427. doi:10.18433/J38P9R.

Turgay Unver, Zhangyan Wu, Lieven Sterck, Mine Turktas, Rolf Lohaus, Zhen Li, Ming Yang, Lijuan He, Tianquan Deng, Francisco Javier Escalante, Carlos Llorens, Francisco J. Roig, Iskender Parmaksiz, Ekrem Dundar, Fuliang Xie, Baohong Zhang, Arif Ipek, Serkan Uranbey, Mustafa Erayman, Emre Ilhan, Oussama Badad, Hassan Ghazal, David A. Lightfoot, Pavan Kasarla, Vincent Colantonio, Huseyin Tombuloglu, Pilar Hernandez, Nurengin Mete, Oznur Cetin, Marc Van Montagu, Huanming Yang, Qiang Gao, Gabriel Dorado, and Yves Van de Peer. Genome of wild olive and the evolution of oil biosynthesis. Proc Natl Acad Sci USA. 2017 October; 114 (44): E9413-E9422. doi:10.1073/pnas.1708621114.

Karakülah G, Suner A. PlanTEnrichment: A tool for enrichment analysis of transposable elements in plants. Genomics. 2017 October; 109 (5-6): 336-340. doi:10.1016/j.ygeno.2017.05.008.

Carr BI, Guerra V.. Serum albumin levels in relation to tumor parameters in hepatocellular carcinoma patients. Int J Biol Markers. 2017 October; 32 (4): e391-e396. doi:10.5301/ijbm.5000300.

Yılmaz Y, Güneş A, Topel H, Atabey N. Signaling Pathways as Potential Therapeutic Targets in Hepatocarcinogenesis. J Gastrointest Cancer. 2017 September; 48 (3): 225-237. doi:10.1007/s12029-017-9958-1.

Emek-Savaş DD, Özmüş G, Güntekin B, Dönmez Çolakoğlu B, Çakmur R, Başar E, Yener GG. Decrease of Delta Oscillatory Responses in Cognitively Normal Parkinson's Disease. Clin EEG Neurosci. 2017 September; 48 (5): 355-364. doi:10.1177/1550059416666718.

Refolo MG, D'Alessandro R, Lippolis C, Carella N, Cavallini A, Messa C, Carr BI.. IGF-1R tyrosine kinase inhibitors and Vitamin K1 enhance the antitumor effects of Regorafenib in HCC cell lines. Oncotarget. 2017 September; 8 (61): 103465-103476. doi:10.18632/oncotarget.21403.

Tokel O, Turnali A, Makey G, Elahi P, Çolakoğlu T, Ergeçen E, Yavuz Ö, Hübner R, Borra MZ, Pavlov I, Bek A, Turan R, Kesim DK, Tozburun S, Ilday ....... In-chip microstructures and photonic devices fabricated by nonlinear laser lithography deep inside silicon. Nature Photonics. 2017 September; 11 (10): 639-645. doi:10.1038/s41566-017-0004-4.

Pavlopoulou A, Bagos PG, Koutsandrea V, Georgakilas AG. Molecular determinants of radiosensitivity in normal and tumor tissue: A bioinformatic approach. Cancer Letters. 2017 September; 403: 37-47. doi:10.1016/j.canlet.2017.05.023.

Ozturk M, Batur T, Ekin U, Erdogan A, İscan E, Keles U, Oz O, Ozen C.. Molecular Pathogenesis of Liver Cancer. J Gastrointest Cancer. 2017 September; 48 (3): 222-224. doi:10.1007/s12029-017-9957-2.

Bosco P, Redolfi A, Bocchetta M, Ferrari C, Mega A, Galluzzi S, Austin M, Chincarini A, Collins DL, Duchesne S, Maréchal B, Roche A, Sensi F, Wolz R, Alegret M, Assal F, Balasa M, Bastin C, Bougea A, Emek-Savaş DD, Engelborghs S, Grimmer T, Grosu G, Kramberger MG, Lawlor B, Mandic Stojmenovic G, Marinescu M, Mecocci P, Molinuevo JL, Morais R, Niemantsverdriet E, Nobili F, Ntovas K, O'Dwyer S, Paraskevas GP, Pelini L, Picco A, Salmon E, Santana I, Sotolongo-Grau O, Spiru L, Stefanova E, Popovic KS, Tsolaki M, Yener GG, Zekry D, Frisoni GB. The impact of automated hippocampal volumetry on diagnostic confidence in patients with suspected Alzheimer's disease: A European Alzheimer's Disease Consortium study. Alzheimers Dement. 2017 September; 13 (9): 1013-1023. doi:10.1016/j.jalz.2017.01.019.

Zhu Y, Serpooshan V, Wu S, Demirci U, Chen P, Güven S. Tissue Engineering of 3D Organotypic Microtissues by Acoustic Assembly. Methods Mol Biol. 2017 September: 1-12. doi:10.1007/7651_2017_68.

Carr BI, Guerra V.. Validation of a Liver Index and Its Significance for HCC Aggressiveness. J Gastrointest Cancer. 2017 September; 48 (3): 262-266. doi:10.1007/s12029-017-9971-4.

Sezgin E, Azbazdar Y, Ng XW, Teh C, Simons K, Weidinger G, Wohland T, Eggeling C, Ozhan G. Binding of canonical Wnt ligands to their receptor complexes occurs in ordered plasma membrane environments. The FEBS journal. 2017 August; 284 (15): 2513-2526. doi:10.1111/febs.14139.

Ors A, Papin C, Favier B, Roulland Y, Dalkara D, Ozturk M, Hamiche A, Dimitrov S, Padmanabhan K.. Histone H3.3 regulates mitotic progression in mouse embryonic fibroblasts. Biochem Cell Biol. 2017 August; 95 (4): 491-499. doi:10.1139/bcb-2016-0190.

Engin Kose, Ozlem Unal, Selda Bulbul, Mehmet Gunduz, Johannes Häberle, Nur Arslan. Identification of three novel mutations in fourteen patients with citrullinemia type 1. Clin Biochem. 2017 August; 50 (12): 686-689. doi:10.1016/j.clinbiochem.2017.01.011.

* Karaca E, Rodrigues JPGLM, Graziadei A, Bonvin AMJJ, Carlomagno T. M3: an integrative framework for structure determination of molecular machines. Nature methods. 2017 August; 14 (9): 897-902. doi:10.1038/nmeth.4392.

Bora E, Yener G.. Meta-Analysis of Social Cognition in Mild Cognitive Impairment. J Geriatr Psychiatry Neurol. 2017 July; 30 (4): 206-213. doi:10.1177/0891988717710337.

Arslan N, Köse E, Güzel O.. The Effect of Ketogenic Diet on Serum Selenium Levels in Patients with Intractable Epilepsy. Biol Trace Elem Res. 2017 July; 178 (1): 1-6. doi:10.1007/s12011-016-0897-7.

Mustufa, Muhammad Ayaz; Aslam, Afshan; Ozen, Cigdem; Hashmi, Imran Ali; Naqvi, Naim ul Hasan; Ozturk, Mehmet; Ali, Firdous Imran. Phenacyl group containing amide derivative of dehydroabietylamine exhibiting enhanced cytotoxic activity against PLC and MCF7 cancer cell lines. MEDICINAL CHEMISTRY RESEARCH. 2017 July; 26 (7): 1367-1376. doi:10.1007/s00044-017-1859-0.

İşcan E, Güneş A, Korhan P, Yılmaz Y, Erdal E, Atabey N. The regulatory role of heparin on c-Met signaling in hepatocellular carcinoma cells. J Cell Commun Signal. 2017 June; 11 (2): 155-166. doi:10.1007/s12079-016-0368-0.

Schneider F, Waithe D, Clausen MP, Galiani S, Koller T, Ozhan G, Eggeling C, Sezgin E. Diffusion of lipids and GPI-anchored proteins in actin-free plasma membrane vesicles measured by STED-FCS. Mol Biol Cell. 2017 June; 28 (11): 1507-1518. doi:10.1091/mbc.E16-07-0536.

Karakülah G. Discovery and Annotation of Plant Endogenous Target Mimicry Sequences from Public Transcriptome Libraries: A Case Study of Prunus persica. Journal of Integrative Bioinformatics. 2017 June; 14 (4). doi:10.1515/jib-2017-0009.

Küçükgüçlü Ö, Söylemez BA, Yener G, Barutcu CD, Akyol MA. Examining Factors Affecting Caregiver Burden: A Comparison of Frontotemporal Dementia and Alzheimer's Disease. Am J Alzheimers Dis Other Demen. 2017 June; 32 (4): 200-206. doi:10.1177/1533317517703479.

Harun Muayad Said Roghaiyeh Safari Ghada Al-Kafaji Ralf-Ingo Ernestus Mario Löhr Astrid Katzer Michael Flentje Carsten Hagemann. Time- and oxygen-dependent expression and regulation of NDRG1 in human brain cancer cells. Oncol Rep. 2017 June; 37 (6): 3625-3634. doi:10.3892/or.2017.5620.

. Role of Albumin in growth inhibition in Hepatocellular Carcinoma. Oncology. 2017 May; 93 (2): 136-142. doi:10.1159/000471807.

Sharma Y, Bashir S, Ansarullah, Faraz Khan M, Ahmad A, Khan F. Inhibition of Src homology 2 domain containing protein tyrosine phosphatase as the possible mechanism of metformin-assisted amelioration of obesity induced insulin resistance in high fat diet fed C57BL/6J mice. Biochem Biophys Res Commun. 2017 May; 487 (1): 54-61. doi:10.1016/j.bbrc.2017.04.012.

Baytak E, Gong Q, Akman B, Yuan H, Chan WC, Küçük C. Whole transcriptome analysis reveals dysregulated oncogenic lncRNAs in natural killer/T-cell lymphoma and establishes MIR155HG as a target of PRDM1. Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine. 2017 May; 39 (5): 1010428317701648. doi:10.1177/1010428317701648.

Engin Köse, Uluc Yis, Semra Hiz, Nur Arslan. A novel mutation in the glycine decarboxylase gene in patient with non-ketotic hyperglycinemia. Neurosciences. 2017 April; 22 (2): 131-133. doi:10.17712/nsj.2017.2.20160468.

Köse E, Güzel O, Demir K, Arslan N.. Changes of thyroid hormonal status in patients receiving ketogenic diet due to intractable epilepsy. Journal of Pediatric Endocrinology and Metabolism. 2017 April; 30 (4): 411-416. doi:10.1515/jpem-2016-0281 .

* Moraru A, Cakan-Akdogan G, Strassburger K, Males M, Mueller S, Jabs M, Muelleder M, Frejno M, Braeckman BP, Ralser M, Teleman AA. THADA Regulates the Organismal Balance between Energy Storage and Heat Production. Developmental cell. 2017 April; 41 (1): 72-81.e6. doi:10.1016/j.devcel.2017.03.016.

Erol Başar, Banu Femir, Derya Durusu Emek-Savaş, Bahar Güntekin and Görsev G. Yener. Increased long distance event-related gamma band connectivity in Alzheimer's disease. Neuroimage Clin. 2017 March; 14: 580-590. doi:10.1016/j.nicl.2017.02.021.

Gümürdü A., Yildiz R., Eren E., Karakülah G., Ünver T., Genç Ş. & Park Y.. MicroRNA exocytosis by large dense-core vesicle fusion. Scientific Reports. 2017 March; 7: 45661. doi:10.1038/srep45661.

Hu X, Baytak E, Li J, Akman B, Okay K, Hu G, Scuto A, Zhang W, Küçük C. The relationship of REL proto-oncogene to pathobiology and chemoresistance in follicular and transformed follicular lymphoma. Leuk Res. 2017 March; 54: 30-38. doi:10.1016/j.leukres.2017.01.001.

Li, Chao; Unver, Turgay; Zhang, Baohong. A high-efficiency CRISPR/Cas9 system for targeted mutagenesis in Cotton (Gossypium hirsutum L.). SCIENTIFIC REPORTS. 2017 March; 7. doi:10.1038/srep43902.

Marino, Ignazio R.; Carr, Brian I.. New Developments in Orthotopic Liver Transplant for Hepatocellular Carcinoma. EXPERIMENTAL AND CLINICAL TRANSPLANTATION. 2017 March; 15: 1-6. doi:10.6002/ect.TOND16.L2.

Alural B, Genc S, Haggarty S.. Diagnostic and therapeutic potential of microRNAs in neuropsychiatric disorders: Past, present, and future. Progress in Neuro-Psychopharmacology and Biological Psychiatry. 2017 February; 73: 87-103. doi:10.1016/j.pnpbp.2016.03.010.

Pinato D., Sharma R., Allara E., Yen C., Arizumi T., Kubota K., Bettinger D., Jang J.W., Smirne C., Kim Y.W., Kudo M., Howell J., Ramaswami R., Burlone M.E., Guerra V., Thimme R., Ishizuka M., Stebbing J., Pirisi M. & Carr B.I.. The ALBI grade provides objective hepatic reserve estimation across each BCLC stage of hepatocellular carcinoma. J. Hepatology. 2017 February; 66 (2): 338-346. doi:10.1016/j.jhep.2016.09.008.

Park CG, Park Y & Suh BC.. The HOOK region of voltage-gated Ca2+ channel β subunits senses and transmits PIP2 signals to the gate. J Gen Physiol. 2017 February; 149 (2): 261-276. doi:10.1085/jgp.201611677.

Alotaibi H, Tuzlakoğlu-Öztürk M, Tazebay UH. The Thyroid Na+/I- Symporter: Molecular Characterization and Genomic Regulation. MOLECULAR IMAGING AND RADIONUCLIDE THERAPY. 2017 February; 26 (1): 92-101. doi:10.4274/2017.26.suppl.11.

Alural B, Ayyildiz ZO, Tufekci KU, Genc S, Genc K. Erythropoietin Promotes Glioblastoma via miR-451 Suppression. Vitam Horm. 2017 January; 105: 249-271. doi:10.1016/bs.vh.2017.03.002.

van Waalwijk van Doorn LJ, Gispert JD, Kuiperij HB, Claassen JA, Arighi A, Baldeiras I, Blennow K, Bozzali M, Castelo-Branco M, Cavedo E, Emek-Savaş .... Improved Cerebrospinal Fluid-Based Discrimination between Alzheimer’s Disease Patients and Controls after Correction for Ventricular Volumes. J Alzheimers Dis. 2017 January; 56 (2): 543-555. doi:10.3233/JAD-160668.

İmge KUNTER, Emine KANDEMİŞ, Hani ALOTAİBİ, Tülay CANDA, Esra ERDAL BAĞRIYANIK. Alteration in the subcellular location of the inhibitor of growth protein p33(ING1b) in estrogen receptor alpha positive breast carcinoma cells. Turkish Journal of Biology. 2017 ; 41 (1): 105-112. doi:10.3906/biy-1602-95 .

IBG Affiliated : 34 ; * Current Adress IBG :5

Calibasi Kocal G, Güven S, Foygel K, Goldman A, Chen P, Sengupta S, Paulmurugan R, Baskin Y, Demirci U. Dynamic Microenvironment Induces Phenotypic Plasticity of Esophageal Cancer Cells Under Flow. Scientific reports. 2016 December; 6: 38221. doi:10.1038/srep38221.

Diler, Ebru; Unver, Turgay; Karakulah, Gokhan. Differential Expression of Hyperhydricity Responsive Peach MicroRNAs. JOURNAL OF INTEGRATIVE BIOINFORMATICS. 2016 December; 13 (5): 57–69. doi:10.2390/biecoll-jib-2016-308.

Arslan, Nur; Guzel, Orkide; Kose, Engin; Yilmaz, Unsal; Kuyum, Pinar; Aksoy, Betul; Calik, Tansel. Is ketogenic diet treatment hepatotoxic for children with intractable epilepsy?. SEIZURE-EUROPEAN JOURNAL OF EPILEPSY. 2016 December; 43: 32-38. doi:10.1016/j.seizure.2016.10.024.

Durmaz, Irem; Guven, Ebru Bilget; Ersahin, Tulin; Ozturk, Mehmet; Calis, Ihsan; Cetin-Atalay, Rengul. Liver cancer cells are sensitive to Lanatoside C induced cell death independent of their PTEN status. PHYTOMEDICINE. 2016 December; 23 (1): 42-51. doi:10.1016/j.phymed.2015.11.012.

Karakulah, Gokhan; Kurtoglu, Kuaybe Yucebilgili; Unver, Turgay. PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs). PLOS ONE. 2016 December; 11 (12). doi:10.1371/journal.pone.0167698.

Marsano, Anna; da Cunha, Carolina M. Medeiros; Ghanaati, Shahram; Gueven, Sinan; Centola, Matteo; Tsaryk, Roman; Barbeck, Mike; Stuedle, Chiara; Barbero, Andrea; Helmrich, Uta; Schaeren, Stefan; Kirkpatrick, James C.; Banfi, Andrea; Martin, Ivan. Spontaneous In Vivo Chondrogenesis of Bone Marrow-Derived Mesenchymal Progenitor Cells by Blocking Vascular Endothelial Growth Factor Signaling. STEM CELLS TRANSLATIONAL MEDICINE. 2016 December; 5 (12): 1730-1738. doi:10.5966/sctm.2015-0321.

Erbayraktar, Zubeyde; Alural, Begum; Erbayraktar, Resat Serhat; Erkan, Erdogan Pekcan. Cell division cycle 7-kinase inhibitor PHA-767491 hydrochloride suppresses glioblastoma growth and invasiveness. CANCER CELL INTERNATIONAL. 2016 November; 16. doi:10.1186/s12935-016-0364-8.

* Adhikari, Deepak; Busayavalasa, Kiran; Zhang, Jingjing; Hu, Mengwen; Risal, Sanjiv; Bayazit, Mustafa Bilal; Singh, Meenakshi; Diril, M. Kasim; Kaldis, Philipp; Liu, Kui. Inhibitory phosphorylation of Cdk1 mediates prolonged prophase I arrest in female germ cells and is essential for female reproductive lifespan. CELL RESEARCH. 2016 November; 26 (11): 1212-1225. doi:10.1038/cr.2016.119.

Ferroudj, Sana; Yildiz, Gokhan; Bouras, Mourad; Iscan, Evin; Ekin, Umut; Ozturk, Mehmet. Role of Fanconi anemia/BRCA pathway genes in hepatocellular carcinoma chemoresistance. HEPATOLOGY RESEARCH. 2016 November; 46 (12): 1264-1274. doi:10.1111/hepr.12675.

Mustufa, Muhammad Ayaz; Ozen, Cigdem; Hashmi, Imran Ali; Aslam, Afshan; Baig, Jameel Ahmed; Yildiz, Gokhan; Muhammad, Shoaib; Solangi, Imam Bakhsh; Naqvi, Naim ul Hasan; Ozturk, Mehmet; Ali, Firdous Imran. Synthesis and bio-molecular study of (+)-N-Acetyl-a-amino acid dehydroabietylamine derivative for the selective therapy of hepatocellular carcinoma. BMC CANCER. 2016 November; 16. doi:10.1186/s12885-016-2942-5.

* Jung-Woong Kim, Hyun-Jin Yang, Matthew John Brooks, Lina Zelinger, Gökhan Karakülah, Norimoto Gotoh, Alexis Boleda, Linn Gieser, Felipe Giuste, Dustin Thad Whitaker, Ashley Walton, Rafael Villasmil, Jennifer Joanna Barb, Peter Jonathan Munson, Koray Dogan Kaya, Vijender Chaitankar, Tiziana Cogliati, Anand Swaroop. NRL-Regulated Transcriptome Dynamics of Developing Rod Photoreceptors. Cell Reports. 2016 November; 17 (9): 2460-2473. doi:10.1016/j.celrep.2016.10.074.

Pavlopoulou, Athanasia; Oktay, Yavuz; Vougas, Konstantinos; Louka, Maria; Vorgias, Constantinos E.; Georgakilas, Alexandros G.. Determinants of resistance to chemotherapy and ionizing radiation in breast cancer stem cells. CANCER LETTERS. 2016 October; 380 (2): 485-493. doi:10.1016/j.canlet.2016.07.018.

Carr BI, Guerra V, Giannini EG, Farinati F, Ciccarese F, Rapaccini GL, Di Marco M, Benvegnù L, Zoli M, Borzio F, Caturelli E, Masotto A, Trevisani F. A Liver Index and its Relationship to Indices of HCC Aggressiveness. J Integr Oncol. 2016 October; 5 (4): 178. doi:10.4172/2329-6771.1000178.

* Chauhan, Sangeeta; Diril, M. Kasim; Lee, Joanna H. S.; Bisteau, Xavier; Manoharan, Vanessa; Adhikari, Deepak; Ratnacaram, Chandrahas Koumar; Janela, Baptiste; Noffke, Juliane; Ginhoux, Florent; Coppola, Vincenzo; Liu, Kui; Tessarollo, Lino; Kaldis, Philipp. Cdk2 catalytic activity is essential for meiotic cell division in vivo. BIOCHEMICAL JOURNAL. 2016 September; 473: 2783-2798. doi:10.1042/BCJ20160607.

Erkan, Deniz; Kayali, Hulya Ayar. Replacement of Soybean Meal with Animal Origin Protein Meals Improved Ramoplanin A2 Production by Actinoplanes sp ATCC 33076. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY. 2016 September; 180 (2): 306-321. doi:10.1007/s12010-016-2100-1.

Karakulah, G.; Karakus, M.; Suner, A.; Demir, S.; Arserim, S. K.; Toz, S.; Ozbel, Y.. sandflyDST: a dynamic web-based decision support tool for the morphological identification of sandflies present in Anatolia and mainland Europe, and user study. MEDICAL AND VETERINARY ENTOMOLOGY. 2016 September; 30 (3): 321-329. doi:10.1111/mve.12182.

* Copf T. Impairments in dendrite morphogenesis as etiology for neurodevelopmental disorders and implications for therapeutic treatments. Neuroscience and biobehavioral reviews. 2016 September; 68: 946-978. doi:10.1016/j.neubiorev.2016.04.008.

Akdogan Y, Emrullahoglu M, Tatlidil D, Ucuncu M, Cakan-Akdogan G. EPR studies of intermolecular interactions and competitive binding of drugs in a drug-BSA binding model. Physical chemistry chemical physics : PCCP. 2016 August; 18 (32): 22531-9. doi:10.1039/c6cp04137j.

Mazzocca, Antonio; Ferraro, Giovanni; Misciagna, Giovanni; Carr, Brian I.. A systemic evolutionary approach to cancer: Hepatocarcinogenesis as a paradigm. MEDICAL HYPOTHESES. 2016 August; 93: 132-137. doi:10.1016/j.mehy.2016.05.027.

Wingender, Gerhard. From the Deep Sea to Everywhere: Environmental Antigens for iNKT Cells. ARCHIVUM IMMUNOLOGIAE ET THERAPIAE EXPERIMENTALIS. 2016 August; 64 (4): 291-298. doi:10.1007/s00005-015-0381-7.

Alagoz, Yagiz; Gurkok, Tugba; Zhang, Baohong; Unver, Turgay. Manipulating the Biosynthesis of Bioactive Compound Alkaloids for Next-Generation Metabolic Engineering in Opium Poppy Using CRISPR-Cas 9 Genome Editing Technology. SCIENTIFIC REPORTS. 2016 August; 6. doi:10.1038/srep30910.

Bakir, Yakup; Eldem, Vahap; Zararsiz, Gokmen; Unver, Turgay. Global Transcriptome Analysis Reveals Differences in Gene Expression Patterns Between Nonhyperhydric and Hyperhydric Peach Leaves. PLANT GENOME. 2016 July; 9 (2). doi:10.3835/plantgenome2015.09.0080.

Gao, Li-Min; Zhao, Sha; Liu, Wei-Ping; Zhang, Wen-Yan; Li, Gan-Di; Kucuk, Can; Hu, Xiao-Zhou; Chan, Wing C.; Tang, Yuan; Ding, Wen-Shuang; Yan, Jia-Qi; Yao, Wen-Qing; Wang, Jian Chao. Clinicopathologic Characterization of Aggressive Natural Killer Cell Leukemia Involving Different Tissue Sites. AMERICAN JOURNAL OF SURGICAL PATHOLOGY. 2016 June; 40 (6): 836-846. doi:10.1097/PAS.0000000000000634.

Kucuk, Can; Hu, Xiaozhou; Gong, Qiang; Jiang, Bei; Cornish, Adam; Gaulard, Philippe; McKeithan, Timothy; Chan, Wing C.. Diagnostic and Biological Significance of KIR Expression Profile Determined by RNA-Seq in Natural Killer/T-Cell Lymphoma. AMERICAN JOURNAL OF PATHOLOGY. 2016 June; 186 (6): 1435-1441. doi:10.1016/j.ajpath.2016.02.011.

Oktay, Yavuz; Ulgen, Ege; Can, Ozge; Akyerli, Cemaliye B.; Yuksel, Sirin; Erdemgil, Yigit; Durasi, I. Melis; Henegariu, Octavian Ioan; Nanni, E. Paolo; Selevsek, Nathalie; Grossmann, Jonas; Erson-Omay, E. Zeynep; Bai, Hanwen; Gupta, Manu; Lee, William; Turcan, Sevin; Ozpinar, Aysel; Huse, Jason T.; Sav, M. Aydin; Flanagan, Adrienne; Gunel, Murat; Sezerman, O. Ugur; Yakicier, M. Cengiz; Pamir, M. Necmettin; Ozduman, Koray. IDH-mutant glioma specific association of rs55705857 located at 8q24.21 involves MYC deregulation. SCIENTIFIC REPORTS. 2016 June; 6. doi:10.1038/srep27569.

Safari, Roghaiyeh; Salimi, Reza; Tunca, Zeliha; Ozerdem, Aysegul; Ceylan, Deniz; Sakizli, Meral. Mutation/SNP analysis in EF-hand calcium binding domain of mitochondrial Ca2+ uptake 1 gene in bipolar disorder patients. JOURNAL OF INTEGRATIVE NEUROSCIENCE. 2016 June; 15 (2): 163-173. doi:10.1142/S0219635216500096.

Brian I Carr, Vito Guerra, Edoardo G. Giannini, Fabio Farinati, Francesca Ciccarese, Gian Ludovico Rapaccini, Maria Di Marco, Luisa Benvegnù, Marco Zoli, Franco Borzio, Eugenio Caturelli, Alberto Masotto and Franco Trevisani. An HCC Aggressiveness Index and Blood GTP, Blirubin and Platelet Levels. J. Integrative Oncology. 2016 June; 5 (2): 172. doi:10.4172/2329-6771.1000172.

Yilmaz Y, Atabey N, Erdal E & Brian I. Carr. Platelets, Microenvironment and Hepatocellular Carcinoma. Biochemistry & Analytical Biochemistry. 2016 June; 5: 281. doi:10.4172/2161-1009.1000281.

Salimi, Reza; Yener, Nilgun; Safari, Roghaiyeh. Use and Evaluation of Newly Synthesized Fluorescence Probes to Detect Generated OHaEuro cent Radicals in Fibroblast Cells. JOURNAL OF FLUORESCENCE. 2016 May; 26 (3): 919-924. doi:10.1007/s10895-016-1780-9.

Guzel, Orkide; Yilmaz, Unsal; Uysal, Utku; Arslan, Nur. The effect of olive oil-based ketogenic diet on serum lipid levels in epileptic children. NEUROLOGICAL SCIENCES. 2016 March; 37 (3): 465-470. doi:10.1007/s10072-015-2436-2.

Carr, Brian I.; Guerra, Vito. Low Alpha-Fetoprotein Levels Are Associated with Improved Survival in Hepatocellular Carcinoma Patients with Portal Vein Thrombosis. DIGESTIVE DISEASES AND SCIENCES. 2016 March; 61 (3): 937-947. doi:10.1007/s10620-015-3922-3.

Namkoong B, Güven S, Ramesan S, Liaudanskaya V, Abzhanov A, Demirci U. Recapitulating cranial osteogenesis with neural crest cells in 3-D microenvironments. Acta biomaterialia. 2016 February; 31: 301-311. doi:10.1016/j.actbio.2015.12.004.

Firtina Karagonlar Z, Koç D, Şahin E, Avci ST, Yilmaz M, Atabey N, Erdal E. Effect of adipocyte-secreted factors on EpCAM+/CD133+ hepatic stem cell population. Biochemical and biophysical research communications. 2016 January; 474 (3): 482-490. doi:10.1016/j.bbrc.2016.04.137.

Firtina Karagonlar Z, Koc D, Iscan E, Erdal E, Atabey N. Elevated hepatocyte growth factor expression as an autocrine c-Met activation mechanism in acquired resistance to sorafenib in hepatocellular carcinoma cells. Cancer science. 2016 January; 107 (4): 407-16. doi:10.1111/cas.12891.

* Bouyer C, Chen P, Güven S, Demirtaş TT, Nieland TJ, Padilla F, Demirci U. A Bio-Acoustic Levitational (BAL) Assembly Method for Engineering of Multilayered, 3D Brain-Like Constructs, Using Human Embryonic Stem Cell Derived Neuro-Progenitors. Advanced materials (Deerfield Beach, Fla.). 2016 January; 28 (1): 161-7. doi:10.1002/adma.201503916.

Carr, Brian I.; Guerra, Vito. A Hepatocellular Carcinoma Aggressiveness Index and Its Relationship to Liver Enzyme Levels. ONCOLOGY. 2016 ; 90 (4): 215-220. doi:10.1159/000444394.

Erkan, Erdogan Pekcan; Vurgun, Ufuk; Erbayraktar, Resat Serhat; Erbayraktar, Zubeyde. Glioblastoma stem cells: a therapeutic challenge. TURKISH JOURNAL OF BIOLOGY. 2016 ; 40 (5): 990-997. doi:10.3906/biy-1508-79.

Carr, Brian I.; Guerra, Vito. Hepatocellular Carcinoma Extrahepatic Metastasis in Relation to Tumor Size and Alkaline Phosphatase Levels. ONCOLOGY. 2016 ; 90 (3): 136-142. doi:10.1159/000443480.

Jeannot, Victor; Busser, Benoit; Vanwonterghem, Laetitia; Michallet, Sophie; Ferroudj, Sana; Cokol, Murat; Coll, Jean-Luc; Ozturk, Mehmet; Hurbin, Amandine. Synergistic activity of vorinostat combined with gefitinib but not with sorafenib in mutant KRAS human non-small cell lung cancers and hepatocarcinoma. ONCOTARGETS AND THERAPY. 2016 ; 9: 6843-6855. doi:10.2147/OTT.S117743.

IBG Affiliated : 13

D'Alessandro, Rosalba; Messa, Caterina; Refolo, Maria Grazia; Carr, Brian I.. Modulation of sensitivity and resistance tomultikinase inhibitors by microenvironmental platelet factors in HCC. EXPERT OPINION ON PHARMACOTHERAPY. 2015 December; 16 (18): 2773-2780. doi:10.1517/14656566.2015.1101065.

Wingender, Gerhard; Kronenberg, Mitchell. OMIP-030: Characterization of Human T Cell Subsets via Surface Markers. CYTOMETRY PART A. 2015 December; 87A (12): 1067-1069. doi:10.1002/cyto.a.22788.

Hanna, Richard N.; Cekic, Caglar; Sag, Duygu; Tacke, Robert; Thomas, Graham D.; Nowyhed, Heba; Herrley, Erica; Rasquinha, Nicole; McArdle, Sara; Wu, Runpei; Peluso, Esther; Metzger, Daniel; Ichinose, Hiroshi; Shaked, Iftach; Chodaczek, Grzegorz; Biswas, Subhra K.; Hedrick, Catherine C.. Patrolling monocytes control tumor metastasis to the lung. SCIENCE. 2015 November; 350 (6263): 985-990. doi:10.1126/science.aac9407.

Wingender, Gerhard; Birkholz, Alysia M.; Sag, Duygu; Farber, Elisa; Chitale, Sampada; Howell, Amy R.; Kronenberg, Mitchell. Selective Conditions Are Required for the Induction of Invariant NKT Cell Hyporesponsiveness by Antigenic Stimulation. JOURNAL OF IMMUNOLOGY. 2015 October; 195 (8): 3838-3848. doi:10.4049/jimmunol.1500203.

Lippolis, Catia; Refolo, Maria Grazia; D'Alessandro, Rosalba; Carella, Nicola; Messa, Caterina; Cavallini, Aldo; Carr, Brian Irving. Resistance to multikinase inhibitor actions mediated by insulin like growth factor-1. JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH. 2015 September; 34. doi:10.1186/s13046-015-0210-1.

Wingender G, Sag D, Kronenberg M. NKT10 cells: a novel iNKT cell subset. Oncotarget. 2015 September; 6 (29): 26552-26553. doi:10.18632/oncotarget.5270.

Pancoska, Petr; Skala, Lubomir; Nesetril, Jaroslav; Carr, Brian I.. Validation of the Concept of a Common Typical Time of Disease Duration for Hepatocellular Carcinoma Patients Using the Fisher Information Processing of Tumor Imaging Results Combined With Network Phenotyping Strategy Quantification of Individual Patient Clinical Profile Patterns. SEMINARS IN ONCOLOGY. 2015 August; 42 (4): 672-678. doi:10.1053/j.seminoncol.2015.05.004.

Ozhan G, Weidinger G. Wnt/β-catenin signaling in heart regeneration. Cell regeneration (London, England). 2015 July; 4 (1): 3. doi:10.1186/s13619-015-0017-8.

Hu X, Chan WC, Kücük C. Generation of a genetically engineered aggressive nk-cell leukemia cell line with stable IL2 expression. Acta Medica International. 2015 July; 2 (2): 78-84. doi:10.5530/ami.2015.3.6.

Alural, Begum; Ozerdem, Aysegul; Allmer, Jens; Genc, Kursad; Genc, Sermin. Lithium protects against paraquat neurotoxicity by NRF2 activation and miR-34a inhibition in SH-SY5Y cells. FRONTIERS IN CELLULAR NEUROSCIENCE. 2015 May; 9. doi:10.3389/fncel.2015.00209.

Gunes A, Iscan E, Topel H, Avci ST, Gumustekin M, Erdal E, Atabey N. Heparin treatment increases thioredoxin interacting protein expression in hepatocellular carcinoma cells. The international journal of biochemistry & cell biology. 2015 January; 65: 169-81. doi:10.1016/j.biocel.2015.05.025.

Dilek Cevik, Gokhan Yıldız & Mehmet Ozturk. Common telomerase reverse transcriptase promoter mutations in hepatocellular carcinomas from different geographical locations. World J Gastroenterol. 2015 January; 21 (1): 311-317. doi:10.3748/wjg.v21.i1.311.

Karakus, Erman; Cakan-Akdogan, Gulcin; Emrullahoglu, Mustafa. A guanidinium modified rhodamine-based fluorescent probe for in vitro/vivo imaging of gold ions. ANALYTICAL METHODS. 2015 ; 7 (19): 8004-8008. doi:10.1039/c5ay01581b.

IBG Affiliated : 1

Alural B, Duran GA, Tufekci KU, Allmer J, Onkal Z, Tunali D, Genc K, Genc S. EPO Mediates Neurotrophic, Neuroprotective, Anti-Oxidant, and Anti-Apoptotic Effects via Downregulation of miR-451 and miR-885-5p in SH-SY5Y Neuron-Like Cells. Frontiers in Immunology. 2014 September; 5: 475. doi:10.3389/fimmu.2014.00475.