Scientific Publications - 2023

IBG Affiliated : 90 ; * Current Adress IBG :1

Kokturk M, Yıldırım S, Atamanalp M, Kiliclioglu M, Ucar A, Ozhan G and Alak G.. Mitigation potential of zingerone and rutin on toxicity mechanisms of nickel to zebrafish based on morphological, DNA damage and apoptosis outcome analysis. Journal of Trace Elements in Medicine and Biology. 2023 December; 80: 127268. doi:10.1016/j.jtemb.2023.127268.

Bagci G, Comez D, Topel H, Yilmaz Y, Bagirsakci E, Gunes A, Batı Ayaz G, Tahmaz I, Bilgen M, Solmaz G, Pesen Okvur D, Atabey N. c-Met activation promotes extravasation of hepatocellular carcinoma cells into 3D-cultured hepatocyte cells in lab-on-a-chip device. Biochimica et biophysica acta. Molecular cell research. 2023 December; 1870 (8): 119557. doi:10.1016/j.bbamcr.2023.119557.

Sena Yaman, Meryem Beyza Avci, Fatma Kurul, Seda Nur Topkaya and Arif E. Cetin. Handheld Optofluidic Platform towards Binding Dynamics Applications in Field-Settings. Sensors and Actuators A: Physical. 2023 December; 363: 114685. doi:10.1016/j.sna.2023.114685.

Balcı Özyurt A, Erkekoğlu P, Zeybek ND, Aşcı A, Yaman Ü, Oflaz O, Kızılgün M, İşcan E, Batur T, Öztürk M, Koçer-Gümüşel B. Toxic effects of Aroclor 1254 on rat liver and modifying roles of selenium. International journal of environmental health research. 2023 December; 33 (12): 1289-1304. doi:10.1080/09603123.2023.2223470.

Wilson LA, Macken WL, Perry LD, Record CJ, Schon KR, Frezatti RSS, Raga S, Naidu K, Köken ÖY, Polat I, Kapapa MM, Dominik N, Efthymiou S, Morsy H, Nel M, Fassad MR, Gao F, Patel K, Schoonen M, Bisschoff M, Vorster A, Jonvik H, Human R, Lubbe E, Nonyane M, Vengalil S, Nashi S, Srivastava K, Lemmers RJLF, Reyaz A, Mishra R, Töpf A, Trainor CI, Steyn EC, Mahungu AC, van der Vliet PJ, Ceylan AC, Hiz AS, Çavdarlı B, Semerci Gündüz CN, Ceylan GG, Nagappa M, Tallapaka KB, Govindaraj P, van der Maarel SM, Narayanappa G, Nandeesh BN, Wa Somwe S, Bearden DR, Kvalsund MP, Ramdharry GM, Oktay Y, Yiş U, Topaloğlu H, Sarkozy A, Bugiardini E, Henning F, Wilmshurst JM, Heckmann JM, McFarland R, Taylor RW, Smuts I, van der Westhuizen FH, Sobreira CFDR, Tomaselli PJ, Marques W Jr, Bhatia R, Dalal A, Srivastava MVP, Yareeda S, Nalini A, Vishnu VY, Thangaraj K, Straub V, Horvath R, Chinnery PF, Pitceathly RDS, Muntoni F, Houlden H, Vandrovcova J, Reilly MM, Hanna MG. Neuromuscular disease genetics in under-represented populations: increasing data diversity. Brain : a journal of neurology. 2023 December; 146 (12): 5098-5109. doi:10.1093/brain/awad254.

Özsoy Ö, Cinleti T, Günay Ç, Sarıkaya Uzan G, Giray Bozkaya Ö, Çağlayan AO, Hız Kurul S, Yiş U. Genetic, serological and clinical evaluation of childhood myasthenia syndromes- single center subgroup analysis experience in Turkey. Acta neurologica Belgica. 2023 December; 123 (6): 2325-2335. doi:10.1007/s13760-023-02370-3.

Dioken DN, Ozgul I, Yilmazbilek I, Yakicier MC, Karaca E, Erson-Bensan AE. An alternatively spliced PD-L1 isoform PD-L1∆3, and PD-L2 expression in breast cancers: implications for eligibility scoring and immunotherapy response. Cancer immunology, immunotherapy : CII. 2023 December; 72 (12): 4065-4075. doi:10.1007/s00262-023-03543-y.

Ozden B, Kryshtafovych A, Karaca E. The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15. Proteins. 2023 December; 91 (12): 1636-1657. doi:10.1002/prot.26598.

Kryshtafovych A, Montelione GT, Rigden DJ, Mesdaghi S, Karaca E, Moult J. Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15. Proteins. 2023 December; 91 (12): 1903-1911. doi:10.1002/prot.26584.

Fide E, Yerlikaya D, Güntekin B, Babiloni C, Yener GG. Coherence in event-related EEG oscillations in patients with Alzheimer's disease dementia and amnestic mild cognitive impairment. Cognitive neurodynamics. 2023 December; 17 (6): 1621-1635. doi:10.1007/s11571-022-09920-0.

Kaya Z, Belder N, Sever-Bahcekapili M, Donmez-Demir B, Erdener ŞE, Bozbeyoglu N, Bagci C, Eren-Kocak E, Yemisci M, Karatas H, Erdemli E, Gursel I, Dalkara T. Vesicular HMGB1 release from neurons stressed with spreading depolarization enables confined inflammatory signaling to astrocytes. Journal of neuroinflammation. 2023 December; 20 (1): 295. doi:10.1186/s12974-023-02977-6.

Özer E, Yilmaz HE, Narin F, Sağlam M. The evaluation of salivary leucine-rich alpha-2 glycoprotein (LRG) and C-reactive protein (CRP) in humans with periodontal health or periodontal disease. Journal of periodontal research. 2023 December. doi:10.1111/jre.13223.

Arif E. Cetin. A Novel Triazolopyrimidinone Derivative: A Portable Electrochemical Approach to Investigate DNA Interactions. Cumhuriyet Science Journal. 2023 December; 44 (4): 617-624. doi:10.17776/csj.1344756.

Turan G, Olgun ÇE, Ayten H, Toker P, Ashyralyyev A, Savaş B, Karaca E, Muyan M. Dynamic proximity interaction profiling suggests that YPEL2 is involved in cellular stress surveillance. Protein science : a publication of the Protein Society. 2023 December: e4859. doi:10.1002/pro.4859.

Abdelhalim KA. Short-chain fatty acids (SCFAs) from gastrointestinal disorders, metabolism, epigenetics, central nervous system to cancer - A mini-review. Chemico-biological interactions. 2023 December; 388: 110851. doi:10.1016/j.cbi.2023.110851.

Vasilopoulos SN, Güner H, Uça Apaydın M, Pavlopoulou A, Georgakilas AG. Dual Targeting of DNA Damage Response Proteins Implicated in Cancer Radioresistance. Genes. 2023 December; 14 (12). doi:10.3390/genes14122227.

Ceylan D, Karacicek B, Tufekci KU, Aksahin IC, Senol SH, Genc S. Mitochondrial DNA oxidation, methylation, and copy number alterations in major and bipolar depression. Frontiers in psychiatry. 2023 December; 14: 1304660. doi:10.3389/fpsyt.2023.1304660.

Katkat E, Demirci Y, Heger G, Karagulle D, Papatheodorou I, Brazma A, Ozhan G. Canonical Wnt and TGF-β/BMP signaling enhance melanocyte regeneration but suppress invasiveness, migration, and proliferation of melanoma cells. Frontiers in cell and developmental biology. 2023 November; 11: 1297910. doi:10.3389/fcell.2023.1297910.

Guzelkaya M, Onal E, Gelinci E, Kumral A, Cakan-Akdogan G. A zebrafish model for studying the mechanisms of newborn hyperbilirubinemia and bilirubin-induced neurological damage. Frontiers in cell and developmental biology. 2023 November; 11: 1275414. doi:10.3389/fcell.2023.1275414.

Ozden B, Şamiloğlu E, Özsan A, Erguven M, Yükrük C, Koşaca M, Oktayoğlu M, Menteş M, Arslan N, Karakülah G, Barlas AB, Savaş B, Karaca E. Benchmarking the accuracy of structure-based binding affinity predictors on Spike-ACE2 deep mutational interaction set. Proteins. 2023 November. doi:10.1002/prot.26645.

Altarejos JY, Pangilinan J, Podgrabinska S, Akinci B, Foss-Freitas M, Neidert AH, Ray Y, Zheng W, Kim S, Kamat V, Huang M, Min S, Mastaitis J, Dominguez-Gutierrez G, Kim JH, Stevis P, Huang T, Zambrowicz B, Olson WC, Godin S, Bradley E, Gewitz AD, Baker M, Hench R, Davenport MS, Chenevert TL, DiPaola F, Yancopoulos GD, Murphy AJ, Herman GA, Musser BJ, Dansky H, Harp J, Gromada J, Sleeman MW, Oral EA, Olenchock BA. Preclinical, randomized phase 1, and compassionate use evaluation of REGN4461, a leptin receptor agonist antibody for leptin deficiency. Science translational medicine. 2023 November; 15 (723): eadd4897. doi:10.1126/scitranslmed.add4897.

Susgun S, Yucesan E, Goncu B, Hasanoglu Sayin S, Kina UY, Ozgul C, Duzenli OF, Kocaturk O, Calik M, Ozbek U, Ugur Iseri SA. Two rare autosomal recessive neurological disorders identified by combined genetic approaches in a single consanguineous family with multiple offspring. Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology. 2023 November. doi:10.1007/s10072-023-07211-y.

Akbaba H, Erel-Akbaba G, Başpınar Y, Şentürk Ş. Design of Liposome Formulations for CRISPR/Cas9 Enzyme Immobilization: Evaluation of 5-Alpha-Reductase Enzyme Knockout for Androgenic Disorders. ACS omega. 2023 November; 8 (48): 46101-46112. doi:10.1021/acsomega.3c07138.

Kale S, Boopathi R, Belotti E, Lone IN, Graies M, Schröder M, Petrova M, Papin C, Bednar J, Ugrinova I, Hamiche A, Dimitrov S. The CENP-A nucleosome: where and when it happens during the inner kinetochore's assembly. Trends in biochemical sciences. 2023 October; 48 (10): 849-859. doi:10.1016/j.tibs.2023.07.010.

Menteş M, Yandım C. Identification of PPA1 inhibitor candidates for potential repurposing in cancer medicine. Journal of cellular biochemistry. 2023 October; 124 (10): 1646-1663. doi:10.1002/jcb.30475.

Arif E. Cetin. A portable and low-cost incubator system enabling real-time cell imaging based on a smartphone. Turkish Journal of Physics. 2023 October; 47 (5): 279-296. doi:10.55730/1300-0101.2749.

Leman Binokay, Yavuz Oktay & Gökhan Karakülah. An API for dynamic estimation of reference intervals for functional abundances of gut microbiota. Biologia. 2023 October; 79: 343-353. doi:10.1007/s11756-023-01556-7.

Karataş M, Azbazdar ME, Camkiranlar M, Tercan-Avci S, Atabey N. Biobank Education for Future Physicians: Training Medical Students Through Student Research Association Networks. Biopreservation and biobanking. 2023 September. doi:10.1089/bio.2022.0210.

Azbazdar Y, Demirci Y, Heger G, Ipekgil D, Karabicici M, Ozhan G. Comparative membrane lipidomics of hepatocellular carcinoma cells reveals diacylglycerol and ceramide as key regulators of Wnt/β-catenin signaling and tumor growth. Molecular oncology. 2023 September; 17: 2314–2336. doi:10.1002/1878-0261.13520.

Arif E. Cetin. A Portable Plasmonic Biosensor Kit for Diagnostics of Sexually Transmitted Infection. Plasmonics. 2023 September. doi:10.1007/s11468-023-02035-0.

Gunalp S, Helvaci DG, Oner A, Bursalı A, Conforte A, Güner H, Karakülah G, Szegezdi E, Sag D. TRAIL promotes the polarization of human macrophages toward a proinflammatory M1 phenotype and is associated with increased survival in cancer patients with high tumor macrophage content. Frontiers in immunology. 2023 September; 14: 1209249. doi:10.3389/fimmu.2023.1209249.

Azbazdar Y, Tejeda-Munoz N, Monka JC, Dayrit A, Binder G, Ozhan G, De Robertis EM. Addition of exogenous diacylglycerol enhances Wnt/β-catenin signaling through stimulation of macropinocytosis. iScience. 2023 September; 26 (10): 108075. doi:10.1016/j.isci.2023.108075.

Atalar MN, Kokturk M, Altindag F, Ozhan G, Ozen T, Demirtas I, Gulcin I. LC-ESI-MS/MS analysis of secondary metabolites of different St. John's wort (Hypericum perforatum) extracts used as food supplements and evaluation of developmental toxicity on zebrafish (Danio rerio) embryos and larvae. South African Journal of Botany. 2023 August; 159: 580-587. doi:10.1016/j.sajb.2023.06.031.

Demir AB, Baris E, Kaner UB, Alotaibi H, Atabey N, Koc A. Toll-interacting protein may affect doxorubicin resistance in hepatocellular carcinoma cell lines. Molecular biology reports. 2023 August. doi:10.1007/s11033-023-08737-2.

Günay Ç, Aykol D, Özsoy Ö, Sönmezler E, Hanci YS, Kara B, Akkoyunlu Sünnetçi D, Cine N, Deniz A, Özer T, Ölçülü CB, Yilmaz Ö, Kanmaz S, Yilmaz S, Tekgül H, Yildiz N, Acar Arslan E, Cansu A, Olgaç Dündar N, Kusgoz F, Didinmez E, Gençpinar P, Aksu Uzunhan T, Ertürk B, Gezdirici A, Ayaz A, Ölmez A, Ayanoğlu M, Tosun A, Topçu Y, Kiliç B, Aydin K, Çağlar E, Ersoy Kosvali Ö, Okuyaz Ç, Besen Ş, Tekin Orgun L, Erol İ, Yüksel D, Sezer A, Atasoy E, Toprak Ü, Güngör S, Ozgor B, Karadağ M, Dilber C, Şahinoğlu B, Uyur Yalçin E, Eldes Hacifazlioglu N, Yaramiş A, Edem P, Gezici Tekin H, Yilmaz Ü, Ünalp A, Turay S, Biçer D, Gül Mert G, Dokurel Çetin İ, Kirik S, Öztürk G, Karal Y, Sanri A, Aksoy A, Polat M, Özgün N, Soydemir D, Sarikaya Uzan G, Ülker Üstebay D, Gök A, Yeşilmen MC, Yiş U, Karakülah G, Bursali A, Oktay Y, Hiz Kurul S. Shared Biological Pathways and Processes in Patients with Intellectual Disability: A Multicenter Study. Neuropediatrics. 2023 August; 54 (4): 225-238. doi:10.1055/a-2034-8528.

Güntekin B, Erdal F, Bölükbaş B, Hanoğlu L, Yener G, Duygun R. Alterations of resting-state Gamma frequency characteristics in aging and Alzheimer's disease. Cognitive neurodynamics. 2023 August; 17 (4): 829-844. doi:10.1007/s11571-022-09873-4.

Özsoy Ö, Cinleti T, Günay Ç, Sarıkaya Uzan G, Yeşilmen MC, Lochmüller H, Horvath R, Yiş U, Oktay Y, Hiz Kurul S. DPAGT1-CDG: Report of Two New Pediatric Patients and Brief Review of the Literature. Molecular syndromology. 2023 August; 14 (4): 322-330. doi:10.1159/000529494.

Argitekin E, Ersoz-Gulseven E, Cakan-Akdogan G, Akdogan Y. Dopamine-Conjugated Bovine Serum Albumin Nanoparticles Containing pH-Responsive Catechol-V(III) Coordination for In Vitro and In Vivo Drug Delivery. Biomacromolecules. 2023 August; 24 (8): 3603-3618. doi:10.1021/acs.biomac.3c00363.

Yetkin S, Alotaibi H. Selection and validation of novel stable reference genes for qPCR analysis in EMT and MET. Experimental cell research. 2023 July; 428 (1): 113619. doi:10.1016/j.yexcr.2023.113619.

Asfa S, Toy HI, Arshinchi Bonab R, Chrousos GP, Pavlopoulou A, Geronikolou SA. Soft Tissue Ewing Sarcoma Cell Drug Resistance Revisited: A Systems Biology Approach. International journal of environmental research and public health. 2023 July; 20 (13): 6288. doi:10.3390/ijerph20136288.

Arif E. Cetin, Seda Nur Topkaya, Ziya Ata Yazici, Ozden Yalcin-Ozuysal. Plasmonic Functional Assay Platform Determines the Therapeutic Profile of Cancer Cells. ACS Sensors. 2023 July; 8 (7): 2543-2555. doi:10.1021/acssensors.3c00208.

Vagif Nevruzoglu, Murat Tomakin, Melih Manir, Selcuk Demir, Fatih Saban Beris, Arif E. Cetin. Enhancing Label‑Free Biosensing With Cryogenic Temperature‑Induced Plasmonic Structures. Plasmonics. 2023 July. doi:10.1007/s11468-023-01963-1.

Bayraktaroğlu Z, Aktürk T, Yener G, de Graaf TA, Hanoğlu L, Yıldırım E, Hünerli Gündüz D, Kıyı İ, Sack AT, Babiloni C, Güntekin B. Abnormal Cross Frequency Coupling of Brain Electroencephalographic Oscillations Related to Visual Oddball Task in Parkinson's Disease with Mild Cognitive Impairment. Clinical EEG and neuroscience. 2023 July; 54 (4): 379-390. doi:10.1177/15500594221128713.

Aslı Kurden Pekmezci, Ece Cakiroglu, Sude Eris, Fatma Aybuke Mazi, Ozlem Silan Coskun, Ertugrul Dalgic, Ozden Oz, Serif Senturk. MALT1 Paracaspase is Overexpressed in Hepatocellular Carcinoma and Promotes Cancer Cell Survival and Growth. Life Sciences. 2023 June; 323: 121690. doi:10.1016/j.lfs.2023.121690.

D. Engur, I. Ercan, C. Kiser, K.U. Tufekci, S. Soy, S.C. Micili, G. Ozhan, S. Guven, A. Kumral, S. Genc. Hydrogen peroxide signaling modulates neuronal differentiation via microglial polarization and Wnt/β-catenin pathway. European Review for Medical and Pharmacological Sciences.. 2023 June; 27 (11): 5083-5096. doi:10.26355/eurrev_202306_32625.

Ozden B, Boopathi R, Barlas AB, Lone IN, Bednar J, Petosa C, Kale S, Hamiche A, Angelov D, Dimitrov S, Karaca E. Molecular Mechanism of Nucleosome Recognition by the Pioneer Transcription Factor Sox. Journal of chemical information and modeling. 2023 June; 63 (12): 3839-3853. doi:10.1021/acs.jcim.2c01520.

Fatma Kurul, Huseyin Istanbullu, Huseyin Oguzhan Kaya, Arif E. Cetin, Seda Nur Topkaya. Electrochemical Properties of Fused Pyrimidine-Triazole Heterocyclic Molecules as Novel Drug Candidates”, doi: (2023). Turkish Journal of Pharmaceutical Sciences. 2023 May. doi:10.4274/tjps.galenos.2023.46095.

Sarıyar E, Karpat O, Sezan S, Baylan SM, Kıpçak A, Guven K, Erdal E, Fırtına Karagonlar Z. EGFR and Lyn inhibition augments regorafenib induced cell death in sorafenib resistant 3D tumor spheroid model. Cellular signalling. 2023 May; 105: 110608. doi:10.1016/j.cellsig.2023.110608.

Ozturk BT, Ozel F, Yaras T, Ekinci B, Oktay Y, Aysevener EO, Alkın T, Direk N. The Relationship Between Cardiovascular Disease Risk and Major Depression. Noro psikiyatri arsivi. 2023 May; 60 (2): 124-128. doi:10.29399/npa.28191.

Gul M, Ayan E, Destan E, Johnson JA, Shafiei A, Kepceoğlu A, Yilmaz M, Ertem FB, Yapici İ, Tosun B, Baldir N, Tokay N, Nergiz Z, Karakadioğlu G, Paydos SS, Kulakman C, Ferah CK, Güven Ö, Atalay N, Akcan EK, Cetinok H, Arslan NE, Şabanoğlu K, Aşci B, Tavli S, Gümüsboğa H, Altuntaş S, Otsuka M, Fujita M, Teki N Ş, Çi Ftçi H, Durdaği S, Karaca E, Kaplan Türköz B, Kabasakal BV, Kati A, DeMi Rci H. Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source. Scientific reports. 2023 May; 13 (1): 8123. doi:10.1038/s41598-023-33989-0.

Bolat S, Ertürk Zararsız G, Doğan K, Kochan N, Yerlitaş SI, Cephe A, Zararsız G, Cicero AFG. Concordance of LDL-C Estimating Equations with Direct Enzymatic Measurement in Diabetic and Prediabetic Subjects. Journal of clinical medicine. 2023 May; 12 (10): 3570. doi:10.3390/jcm12103570.

Baykal-Köse S, Voldoire M, Desterke C, Sorel N, Cayssials E, Johnson-Ansah H, Guerci-Bresler A, Bennaceur-Griscelli A, Chomel JC, Turhan AG. ENOX2 NADH Oxidase: A BCR-ABL1-Dependent Cell Surface and Secreted Redox Protein in Chronic Myeloid Leukemia. Turkish journal of haematology : official journal of Turkish Society of Haematology. 2023 May; 40 (2): 101-117. doi:10.4274/tjh.galenos.2023.2022-0339.

Diril MK, Erguven M. Genetic dissection of the Mastl-Arpp19/ENSAPP2A-B55δ pathway in mammalian cells. Turkish Journal of Biochemistry. 2023 April; 48 (2): 1-13. doi:10.1515/tjb-2022-0191.

Altun Z, Yuan H, Baran B, Aktaş S, Esmeray Sönmez E, Küçük C, Olgun N. Whole-exome sequencing reveals genetic variants in low-risk and high-risk neuroblastoma. Gene. 2023 April; 860: 147233. doi:10.1016/j.gene.2023.147233.

Ahmet Şeyhanlı, Tevfik Hatipoğlu, Burcu Akman, Xiaozhou Hu, Güner Hayri Özsan, Can Küçük. Genetic and Epigenetic Analyses Reveal Transcriptional Silencing of SOX7 due to Deletion in a Multiple Myeloma Case with Double Relapse. International Journal of Hematology and Oncology. 2023 April; 33 (1306-133X): 054-056. doi:10.4999/uhod.236587.

Merve Arslan; Tugce Ulucay; Seyit Kale; Sibel Kalyoncu. Engineering of conserved residues near heavy chain complementary determining region 3 (HCDR3) improves both affinity and stability. BBA - Proteins and Proteomics. 2023 April; 1871 (4): 140915. doi:10.1016/j.bbapap.2023.140915.

Meryem Beyza Avci, S. Deniz Yasar, Arif E. Cetin. An Optofluidic Platform for Cell-Counting Applications”, , doi: 10.1039/D3AY00344B (2023). Analytical Methods. 2023 April; 15 (18): 2244-2252 . doi:10.1039/D3AY00344B.

Karabicici M, Akbari S, Ertem O, Gumustekin M, Erdal E. Human liver organoid models for assessment of drug toxicity at the preclinical stage. Endocrine, metabolic & immune disorders drug targets. 2023 April. doi:10.2174/1871530323666230411100121.

Onursal C, Reel B, Bintepe C, Guzeloglu M, Ersoy N, Bagriyanik A. Pioglitazone inhibits oxidative stress, MMP-mediated inflammation and vascular dysfunction in high glucose-induced human saphenous vein grafts. Journal of diabetes and its complications. 2023 April; 37 (4): 108421. doi:10.1016/j.jdiacomp.2023.108421.

Lecca M, Pehlivan D, Suñer DH, Weiss K, Coste T, Zweier M, Oktay Y, Danial-Farran N, Rosti V, Bonasoni MP, Malara A, Contrò G, Zuntini R, Pollazzon M, Pascarella R, Neri A, Fusco C, Marafi D, Mitani T, Posey JE, Bayramoglu SE, Gezdirici A, Hernandez-Rodriguez J, Cladera EA, Miravet E, Roldan-Busto J, Ruiz MA, Bauzá CV, Ben-Sira L, Sigaudy S, Begemann A, Unger S, Güngör S, Hiz S, Sonmezler E, Zehavi Y, Jerdev M, Balduini A, Zuffardi O, Horvath R, Lochmüller H, Rauch A, Garavelli L, Tournier-Lasserve E, Spiegel R, Lupski JR, Errichiello E. Bi-allelic variants in the ESAM tight-junction gene cause a neurodevelopmental disorder associated with fetal intracranial hemorrhage. American journal of human genetics. 2023 April; 110 (4): 681-690. doi:10.1016/j.ajhg.2023.03.005.

Ergüç A, Karakuş F, Arzuk E, Mutlu N, Orhan H. Role of Oxidative Stress and Reactive Metabolites in Cytotoxicity & Mitotoxicity of Clozapine, Diclofenac and Nifedipine in CHO-K1 Cells In Vitro. Endocrine, metabolic & immune disorders drug targets. 2023 April; 23 (14): 1725-1739. doi:10.2174/1871530323666230419084613.

Alotaibi H. The transcription factor ELF5 is essential for early preimplantation development. Molecular biology reports. 2023 March; 50: 2119-2125. doi:10.1007/s11033-022-08217-z.

Angelov D, Boopathi R, Lone IN, Menoni H, Dimitrov S, Cadet J. Capturing Protein-Nucleic Acid Interactions by High-Intensity Laser-Induced Covalent Cross-Linking(†). Photochemistry and photobiology. 2023 March; 99 (2): 296-312. doi:10.1111/php.13699.

Özden-Yılmaz G, Savas B, Bursalı A, Eray A, Arıbaş A, Senturk S, Karaca E, Karakülah G, Erkek-Ozhan S. Differential Occupancy and Regulatory Interactions of KDM6A in Bladder Cell Lines. Cells. 2023 March; 12 (6): 836. doi:10.3390/cells12060836.

Gorkem Liman, Emre Ergene, Emrecan Yildiz, Kubra Ozkan Hukum, Pinar Yilgor Huri, Arif E. Cetin, Hakan Usta, Gokhan Demirel. Dynamic Tuning of Plasmonic Hot-Spot Generation through Cilia-Inspired Magnetic Actuators. Advanced Intelligent Systems. 2023 March; 5 (6): 2200420. doi:10.1002/aisy.202200420.

Özbek M, Toy HI, Oktay Y, Karakülah G, Suner A, Pavlopoulou A. An in silico approach to the identification of diagnostic and prognostic markers in low-grade gliomas. PeerJ. 2023 March; 11: e15096. doi:10.7717/peerj.15096.

Takan I, Karakülah G, Louka A, Pavlopoulou A. "In the light of evolution:" keratins as exceptional tumor biomarkers. PeerJ. 2023 March; 11: e15099. doi:10.7717/peerj.15099.

Kalyoncu S, Yilmaz S, Kuyucu AZ, Sayili D, Mert O, Soyturk H, Gullu S, Akinturk H, Citak E, Arslan M, Taskinarda MG, Tarman IO, Altun GY, Ozer C, Orkut R, Demirtas A, Tilmensagir I, Keles U, Ulker C, Aralan G, Mercan Y, Ozkan M, Caglar HO, Arik G, Ucar MC, Yildirim M, Yildirim TC, Karadag D, Bal E, Erdogan A, Senturk S, Uzar S, Enul H, Adiay C, Sarac F, Ekiz AT, Abaci I, Aksoy O, Polat HU, Tekin S, Dimitrov S, Ozkul A, Wingender G, Gursel I, Ozturk M, Inan M. Process development for an effective COVID-19 vaccine candidate harboring recombinant SARS-CoV-2 delta plus receptor binding domain produced by Pichia pastoris. Scientific reports. 2023 March; 13 (1): 5224. doi:10.1038/s41598-023-32021-9.

Koşaca M, Yılmazbilek İ, Karaca E. PROT-ON: A structure-based detection of designer PROTein interface MutatiONs. Frontiers in molecular biosciences. 2023 March; 10: 1063971. doi:10.3389/fmolb.2023.1063971.

Ercan I, Cilaker Micili S, Soy S, Engur D, Tufekci KU, Kumral A, Genc S. Bilirubin induces microglial NLRP3 inflammasome activation in vitro and in vivo. Molecular and cellular neurosciences. 2023 March; 125: 103850. doi:10.1016/j.mcn.2023.103850.

Yazar V, Yilmaz IC, Bulbul A, Klinman DM, Gursel I. Gene network landscape of mouse splenocytes reveals integrin complex as the A151 ODN-responsive hub molecule in the immune transcriptome. Molecular therapy. Nucleic acids. 2023 March; 31: 553-565. doi:10.1016/j.omtn.2023.02.004.

Çekok FK, Kahraman T, Genç A, Duran G, Çolakoğlu BD, Yerlikaya D, Yener G. Association between executive and physical functions in people with Parkinson's disease. Somatosensory & motor research. 2023 March: 1-7. doi:10.1080/08990220.2023.2186393.

Guneri-Sozeri PY, Özden-Yılmaz G, Kisim A, Cakiroglu E, Eray A, Uzuner H, Karakülah G, Pesen-Okvur D, Senturk S, Erkek-Ozhan S. FLI1 and FRA1 transcription factors drive the transcriptional regulatory networks characterizing muscle invasive bladder cancer. Communications biology. 2023 February; 6 (1): 199. doi:10.1038/s42003-023-04561-3.

Yakubogullari N, Cagir A, Bedir E, Sag D. Astragalus Saponins, Astragaloside VII and Newly Synthesized Derivatives, Induce Dendritic Cell Maturation and T Cell Activation. Vaccines. 2023 February; 11 (3): 495. doi:10.3390/vaccines11030495.

Eskiocak YC, Ayyildiz ZO, Gunalp S, Korkmaz A, Helvaci DG, Dogan Y, Sag D, Wingender G. The Ca2+ concentration impacts the cytokine production of mouse and human lymphoid cells and the polarization of human macrophages in vitro. PloS one. 2023 February; 18 (2): e0282037. doi:10.1371/journal.pone.0282037.

Atalay N, Akcan EK, Gul M, Ayan E, Destan E, Ertem FB, Tokay N, Cakilkaya B, Nergiz Z, ..., Karaca E, Turkoz BK, Kabasakal BV, Kati A, Demirci H. Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source "Turkish DeLight". Turkish Journal of Biology. 2023 February; 47: 1-13. doi:10.55730/1300-0152.2637.

* Ciftci E, Bozbeyoglu N, Gursel I, Korkusuz F, Bakan Misirlioglu F, Korkusuz P. Comparative analysis of magnetically activated cell sorting and ultracentrifugation methods for exosome isolation. PloS one. 2023 February; 18 (2): e0282238. doi:10.1371/journal.pone.0282238.

Saglam-Metiner P, Devamoglu U, Filiz Y, Akbari S, Beceren G, Goker B, Yaldiz B, Yanasik S, Biray Avci C, Erdal E, Yesil-Celiktas O. Spatio-temporal dynamics enhance cellular diversity, neuronal function and further maturation of human cerebral organoids. Communications biology. 2023 February; 6 (1): 173. doi:10.1038/s42003-023-04547-1.

Louro JA, Boopathi R, Beinsteiner B, Mohideen Patel AK, Cheng TC, Angelov D, Hamiche A, Bendar J, Kale S, Klaholz BP, Dimitrov S. Nucleosome dyad determines the H1 C-terminus collapse on distinct DNA arms. Structure (London, England : 1993). 2023 February; 31 (2): 201-212.e5. doi:10.1016/j.str.2022.12.005.

Bajinka O, Tan Y, Darboe A, Ighaede-Edwards IG, Abdelhalim KA. The gut microbiota pathway mechanisms of diabetes. AMB Express. 2023 February; 13 (1): 16. doi:10.1186/s13568-023-01520-3.

Cizmeci S, Ongun S, Sarac A, Sel E, Tozburun S, Durmus N. Low frequency neuromuscular electrical stimulation applied to the bulbospongiosus muscle prolongs the ejaculation latency in a rat model. International journal of impotence research. 2023 February. doi:10.1038/s41443-023-00678-5.

Tetik M, Direk N, Uzgan BÖ, Aykaç C, Ekinci B, Yaraş T, Kuruoğlu A, Özel F, Ermiş Ç, Alkın T, Oktay Y. Associations Between Blood Levels of NLRP3 Inflammasome Components and Obsessive Compulsive Disorder. Noro psikiyatri arsivi. 2023 February; 60 (1): 28-36. doi:10.29399/npa.28127.

M. Kokturk, S. Yıldırım, M. H. Calimli, M. S. Nas, F. Ibaokurgil, G. Ozhan, M. Atamanalp & G. Alak. Perspective on green synthesis of RP-Pd/AC NPs: characterization, embryonic and neuronal toxicity assessment. International Journal of Environmental Science and Technology. 2023 January. doi:10.1007/s13762-022-04005-1.

Melis Asal, Gamze Koçak, Vedat Sarı, Tuba Reçber, Emirhan Nemutlu, Canan Aslı Utine, Sinan Güven. Development of lacrimal gland organoids from iPSC derived multizonal ocular cells. Frontiers In Cell and Developmental Biology. 2023 January; 10. doi:10.3389/fcell.2022.1058846.

Gizem Yilmaz, Zehra Tavsan, Elcin Cagatay, Gizem Kursunluoglu, Hulya Ayar Kayali. Exosomes released from cisplatin-resistant ovarian cancer cells modulate the reprogramming of cells in tumor microenvironments toward the cancerous cells. Biomedicine & Pharmacotherapy. 2023 January; 157: 113973. doi:10.1016/j.biopha.2022.113973.

Azbazdar Y, Poyraz YK, Ozalp O, Nazli D, Ipekgil D, Cucun G, Ozhan G. High-fat diet feeding triggers a regenerative response in the adult zebrafish brain. Molecular neurobiology. 2023 January; 60 (2): 1-21. doi:10.1007/s12035-023-03210-4.

Atalay EB, Senturk S, Kayali HA. Wild-type IDH1 Knockout Leads to G0/G1 Arrest, Impairs Cancer Cell Proliferation, Altering Glycolysis, and the TCA Cycle in Colon Cancer. Biochemical genetics. 2023 January. doi:10.1007/s10528-022-10325-1.

Mazi FA, Cakiroglu E, Uysal M, Kalyoncu M, Demirci D, Sozeri PYG, Yilmaz GO, Ozhan SE, Senturk S. The paracaspase MALT1 is a downstream target of Smad3 and potentiates the crosstalk between TGF-β and NF-kB signaling pathways in cancer cells. Cellular signalling. 2023 January; 105: 110611. doi:10.1016/j.cellsig.2023.110611.

Hünerli-Gündüz D, Özbek İşbitiren Y, Uzunlar H, Çavuşoğlu B, Çolakoğlu BD, Ada E, Güntekin B, Yener GG. Reduced power and phase-locking values were accompanied by thalamus, putamen, and hippocampus atrophy in Parkinson's disease with mild cognitive impairment: an event-related oscillation study. Neurobiology of aging. 2023 January; 121: 88-106. doi:10.1016/j.neurobiolaging.2022.10.001.

Keske N, Özay B, Tükel EY, Menteş M, Yandım C. In silico drug screen reveals potential competitive MTHFR inhibitors for clinical repurposing. Journal of biomolecular structure & dynamics. 2023 January; 41 (21): 11818-11831. doi:10.1080/07391102.2022.2163697.

Ertürk Zararsız G, Bolat S, Cephe A, Kochan N, Yerlitaş SI, Doğan HO, Zararsız G. Validation of low-density lipoprotein cholesterol equations in pediatric population. PeerJ. 2023 January; 11: e14544. doi:10.7717/peerj.14544.